View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_high_4 (Length: 535)
Name: NF7559_high_4
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 28606021 - 28606548
Alignment:
| Q |
1 |
tcagtgctttctagttttcaagccattggcattgacgttgaagccacggttgctcttttaggtaccaaatattctctttaattggctaattgctttctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28606021 |
tcagtgctttctagttttcaagccattggcattgacgttgaagccacggttgctcttttaggtaccaaatattctctttaattggctaattgctttctgt |
28606120 |
T |
|
| Q |
101 |
tatttctgttacacatccactgaaaaccgttccaattacattaacacacttactattactttaaaatttcaatagtcaaacgtaaaacataattcataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28606121 |
tatttctgttacacatccactgaaaaccgttccaattacattaacacacttactattactttaaaatttcaaaagtcaaacgtaaaacataattcataag |
28606220 |
T |
|
| Q |
201 |
caccttttattacattaataatacatggacatccactttttatacacttatctgtgacaatggttaatcatgttcgaaaatgtggttaaatttaactata |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28606221 |
cacctttcattacattaataatacatggacatccactttttatacacttatctgtgacaatggttaatcatgttcgaaaatgtggttaaatttaactata |
28606320 |
T |
|
| Q |
301 |
tgcaataacacaatttttaatgtaaaataattatttttgtaagtgtgggagtcatggaatatttttgtttacaatttaacattacgttggtcactttgat |
400 |
Q |
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| T |
28606321 |
tgcaataacacaatttttaatgtaaaataatt-tttttgtaagtgtgggagtcatggaatatttttgtttacaatttaacattacgttggtcactttgat |
28606419 |
T |
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| Q |
401 |
tcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactataccccacagtggatccaacgttagatactacacatgctgcc |
500 |
Q |
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| T |
28606420 |
tcaattaggagcacactcggttggaagagtacattgcatgaatttggtccacagactataccccacagtggatccaacgttagatcctacacatgctgcc |
28606519 |
T |
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| Q |
501 |
tacctaaaacgtaggtgcccaacaccaaa |
529 |
Q |
| |
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| T |
28606520 |
tacctaaaacgtaggtgcccaacaccaaa |
28606548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 388 - 529
Target Start/End: Original strand, 28636192 - 28636333
Alignment:
| Q |
388 |
tggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactataccccacagtggatccaacgttagatac |
487 |
Q |
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|||||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28636192 |
tggtcactttgattaaatcaggagcacactcagttggaagagtacattgcatgaatttggtccacagactataccccacagtggatccaacgttagatcc |
28636291 |
T |
|
| Q |
488 |
tacacatgctgcctacctaaaacgtaggtgcccaacaccaaa |
529 |
Q |
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| T |
28636292 |
tacacatgctacctacctaaaacgtaggtgcccaacaccaaa |
28636333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 387 - 529
Target Start/End: Original strand, 28663761 - 28663903
Alignment:
| Q |
387 |
ttggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactataccccacagtggatccaacgttagata |
486 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| || |||||||||||||||| |||| ||||||| |||||||||||||| ||||| |||| | |||| |
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| T |
28663761 |
ttggtcactttgattcaatcaggaggacactcagtgggaagagtacattgcatgaatatggtccatagactataccccacggtggacccaaagctagacc |
28663860 |
T |
|
| Q |
487 |
ctacacatgctgcctacctaaaacgtaggtgcccaacaccaaa |
529 |
Q |
| |
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| ||| |||||||||| ||||||| ||| |||||||||||||| |
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| T |
28663861 |
ccacatatgctgcctatctaaaacttagatgcccaacaccaaa |
28663903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 387 - 530
Target Start/End: Original strand, 28656685 - 28656828
Alignment:
| Q |
387 |
ttggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactataccccacagtggatccaacgttagata |
486 |
Q |
| |
|
||||||||| ||||| ||| ||||||||| || || ||||||||||| |||| ||| ||||||||||||||||||| | |||||| |||||| |||| |
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| T |
28656685 |
ttggtcactatgattgaatcaggagcacattcagtgggaagagtacactgcataaatatggtccacagactataccctatagtggacccaacgctagacc |
28656784 |
T |
|
| Q |
487 |
ctacacatgctgcctacctaaaacgtaggtgcccaacaccaaac |
530 |
Q |
| |
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||||| ||| || ||||||||||||||| || |||| ||||||| |
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| T |
28656785 |
ctacatatgttgtctacctaaaacgtagatgtccaaaaccaaac |
28656828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 28635944 - 28636005
Alignment:
| Q |
14 |
gttttcaagccattggcattgacgttgaagccacggttgctcttttaggtaccaaatattct |
75 |
Q |
| |
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|||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28635944 |
gttttcaagctatcggtgttgacgttgaagccacggttgctcttttaggtaccaaacattct |
28636005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 28663480 - 28663542
Alignment:
| Q |
3 |
agtgctttctagttttcaagccattggcattgacgttgaagccacggttgctcttttaggtac |
65 |
Q |
| |
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|||||||||| |||||||||||||||| | ||||||||||| || ||||||||||||||||| |
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| T |
28663480 |
agtgctttctcgttttcaagccattggtgtagacgttgaagcaactgttgctcttttaggtac |
28663542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 28656451 - 28656512
Alignment:
| Q |
14 |
gttttcaagccattggcattgacgttgaagccacggttgctcttttaggtaccaaatattct |
75 |
Q |
| |
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|||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
28656451 |
gtttccaagctattggtgttgatgttgaagccacggttgctcttttaggtaccaaacattct |
28656512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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