View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_high_6 (Length: 447)
Name: NF7559_high_6
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 110 - 425
Target Start/End: Original strand, 6910252 - 6910568
Alignment:
| Q |
110 |
ccagttgttgtcggtgtggtaatac-atatgaatagagttttaagattgcgacaaaaatacataaagcgataaaattcaaaagtttcattgacgtgtaca |
208 |
Q |
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| T |
6910252 |
ccagttgttgtcggtgtggtaataccatatggatagagttttaagattgcgacaaaaatacataaagcgataaaattcaaaagtttcattgacgtgtaca |
6910351 |
T |
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| Q |
209 |
ttcaaatctaagtttcgttgaaaaggtattattgctcattcacttttcgactagttgagcaaaactactaacaattactacatcctaacgagtaacataa |
308 |
Q |
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| T |
6910352 |
ttcaaatctaagtttcgttgaaaaggtattattgctcattcacttttcgactagttgagcaaaactactaacaattactacatcctaacgagtaacataa |
6910451 |
T |
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| Q |
309 |
ataaacaaaatattcaacgatctatataaaacaaccttatgcctcaaaatatcagtttacaaaggaacaccagttctacattacatgacgttataattga |
408 |
Q |
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| T |
6910452 |
ataaacaaaatattcaacgatctatataaaacaaccttatgcctcaaaatatcagtttacaaaggaacaccagttctacattacatgacgttataattga |
6910551 |
T |
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| Q |
409 |
attatattatactacct |
425 |
Q |
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| T |
6910552 |
attatattatactacct |
6910568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 6910156 - 6910210
Alignment:
| Q |
14 |
atatccccgacatatataatgttataatgtgcacgttattctctcatcatatgac |
68 |
Q |
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| T |
6910156 |
atatccccgatatatataatgttataatgtgcacgttattctctcatcatatgac |
6910210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 6906260 - 6906303
Alignment:
| Q |
179 |
taaaattcaaaagtttcattgacgtgtacattcaaatctaagtt |
222 |
Q |
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| T |
6906260 |
taaaattcaaaagtttcattgatgtgtatattcaaagctaagtt |
6906303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 30948055 - 30947917
Alignment:
| Q |
289 |
catcctaacgagtaacataaataaacaaaatattcaacgatctatataaaacaacctta-------tgcctcaaaatatcagtttacaaaggaacaccag |
381 |
Q |
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| T |
30948055 |
catccgaacaaggaacagaaataaacaaaatattcagcgatctatagaaaacaacattaaattaaatgactcaaaatatcagcttataaaggaacaccag |
30947956 |
T |
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| Q |
382 |
ttctacattacatgacgttataattgaattatattatac |
420 |
Q |
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| T |
30947955 |
ttctgcattacacaaagttataattggattgtattatac |
30947917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 418
Target Start/End: Original strand, 40088923 - 40088997
Alignment:
| Q |
347 |
atgcctcaaaatatcagtttac---aaaggaacaccagttctacattacatgacgttataattgaattatattat |
418 |
Q |
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| T |
40088923 |
atgcctcaaaatataagtttaattaaaaggaacaacagttccacattacatgatgttatgattggattattttat |
40088997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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