View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7559_low_10 (Length: 409)
Name: NF7559_low_10
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_10 |
 | |
|
| [»] scaffold0425 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 30)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 6258295 - 6258670
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
6258295 |
atcagtcagcatctcaagattgattaattctcttatcttctttggcatcttcttaatatgcgtgcctttcaaattaagatgacataaattgatgagattg |
6258394 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
6258395 |
tgaaaatttgatgggagctcagtcagtttaaaacattcttccagtaagagtgtatgcaaattatacaacatacaaatggaatcaggtaaacttgtaatct |
6258494 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
6258495 |
cggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctaagagattgcaaccagagaaagacaatatccgcaaata |
6258594 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgcttctcaccatagccttgttcttct |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
6258595 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgtttctcaccatatccttgttcttct |
6258670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 6141379 - 6141754
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6141379 |
atcagtcagcatctcaggattgattaaccctcttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgacgagtttg |
6141478 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
6141479 |
caaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagggtatgcaaattatacagcttacaaatggaattaggtaagcttgtaatct |
6141578 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||| || ||||| || ||||||||||||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
6141579 |
ccgtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagctagctctaagagattgcaaccattgaaagacaacatccgcaaata |
6141678 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgcttctcaccatagccttgttcttct |
392 |
Q |
| |
|
||||||||| |||||||| | ||||||||| |||| |||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
6141679 |
ttttagtctaaaaaacaaattaagctgcacatcggtgcttatcttaaagcgttggtcaccatagccttgtgcttct |
6141754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 13271489 - 13271114
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13271489 |
atcagtcagcatctcaagattgattaattcacttatctcctttggcatcttcttaatatgcgtgcctttcaaattaagatgacgtaaattgatgagtttg |
13271390 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13271389 |
caaaaatttggcgggagctcaagtagtttaaaacattctttcagcaagagcgtatgcaaattatacaacatacaaatggaatcaggtaagcttgtaatct |
13271290 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||| ||||||||||||| |||||| || ||| | ||||| |
|
|
| T |
13271289 |
cggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctgagagattgcaacctttgaaagataacatccgtaaata |
13271190 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgcttctcaccatagccttgttcttct |
392 |
Q |
| |
|
|| |||||||||| ||||| | | ||||||||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
13271189 |
ttgtagtcttgaatacaaattatactgcacattggtggatatcttaaagcgtttatcaccatagccttgtgcttct |
13271114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 6167984 - 6168359
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6167984 |
atcagtcagcatctcaagattgattaatactcttatctcctttggcatcttcttgatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
6168083 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
6168084 |
ccaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagcgtatgcaaattatacagcatacaaatggaattaggtaagcttgtaatgt |
6168183 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||| || ||||| || ||||||||||||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
6168184 |
cggtgtaagaaaggtctagatatcgtagaagctttaaatttcttatctcatcagctagctctaagagattgcaaccattgaaagacaaccttcgcaaata |
6168283 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgcttctcaccatagccttgttcttct |
392 |
Q |
| |
|
||||||||| |||||||| | |||| |||| |||| ||||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
6168284 |
ttttagtctaaaaaacaaattaagctgaacatcggtgcttatctgaaagcgctggtcaccatagccttgtgcttct |
6168359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 6244386 - 6244761
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
|||||||||||||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6244386 |
atcagtcagcatctcaaggttgattaaccctctcatctcctttggcatcttcttaatatgggtgcctttcaaattaagatgacgtaaattgatgagtttg |
6244485 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6244486 |
caaaaatttggcgggagctcaagtagtttaaaacattcttccagtaagagcgtatgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
6244585 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||| |||||||||||||| |||||| || || | ||||| |
|
|
| T |
6244586 |
cggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctgagagattgcaaccattgaaagataacttccgtaaata |
6244685 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgcttctcaccatagccttgttcttct |
392 |
Q |
| |
|
|| || ||||||| ||||| | | ||||||||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
6244686 |
ttgtactcttgaatacaaattatactgcacattggtggatatcttaaagcgtttatcaccatagccttgtgcttct |
6244761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 392
Target Start/End: Original strand, 6264782 - 6265153
Alignment:
| Q |
21 |
gtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttgtgaa |
120 |
Q |
| |
|
|||||||||||||| || ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
6264782 |
gtcagcatctcaaggtttattaaccctctcatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgacgagtttgcaaa |
6264881 |
T |
|
| Q |
121 |
aatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatctcggt |
220 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||| |||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
6264882 |
aatttgatgggagctcagtcaatttaaaacattcttccagtaagagggtatgcaaactatacagcttacaaatggaattaggtaagcttgtaatctctgt |
6264981 |
T |
|
| Q |
221 |
gtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaatatttt |
320 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||| || |||||||||||||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
6264982 |
gtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagctagctctaagagattgcaacccgagaaagacaacattcgcaaatatttt |
6265081 |
T |
|
| Q |
321 |
agtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgcttctcaccatagccttgttcttct |
392 |
Q |
| |
|
|||||| |||||||| | ||||||||| |||| || ||||||||| | ||||||||||||||| ||||| |
|
|
| T |
6265082 |
agtcttaaaaacaaattaagctgcacatcggtgcgtaccttaaagcgttggtcaccatagccttgtgcttct |
6265153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 6237846 - 6238153
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6237846 |
atcagtcagaatctcaagattgaataattctcgtatctcctttggcatcttcttaatatgcgttcctttcaaattaagatgacgtaaattgataagtttg |
6237945 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
6237946 |
caaaaatttgatgggagcttagtcaatttaaaacattcttccggtaagagcgtatgcaaattatacaacatgcaaatggaattaggtaagcttgtaattt |
6238045 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttat---ttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaa |
313 |
Q |
| |
|
| |||||||||||||||||||||| || ||||||||| || ||||| || |||||||||||||| |||||| ||||| ||| |||||| ||| |||| |
|
|
| T |
6238046 |
cagtgtaagaaaggtctagatagcacaaaagctttaaatttcttatcagatcatcagctagctctaaaagattggaaccagagatagacaacatccgcaa |
6238145 |
T |
|
| Q |
314 |
atatttta |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
6238146 |
atatttta |
6238153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 6899181 - 6899517
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| | ||||||||||| | ||||| ||||||| || |||||||||||||| ||||| ||||||| |
|
|
| T |
6899181 |
atcagtcagcatctcaagattgtttaaccctcctatcttcattggcatcttcattatatgagtgccttgcagattaagatgacgtagattgacgagtttg |
6899280 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
||||| ||| || |||||||||||||||||||| ||| ||||||||| || |||||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
6899281 |
caaaaatctgaagggagctcagtcagtttaaaacaaccttgcagtaagagtgtctgcaaattatacagcatacaaatggaatcaggtaagcttgcaatct |
6899380 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| || ||||| || ||||||||||||| ||||||||||||| |||||||||| | | ||||||| |
|
|
| T |
6899381 |
cggtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagctagctctatgagattgcaaccagagaaagacaacacccgcaaata |
6899480 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtg |
353 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
6899481 |
ttttactcttgaaaacaaattatgctgcacattggtg |
6899517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 6592289 - 6591914
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||| | || ||||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||| |
|
|
| T |
6592289 |
atcagtcagcatttcaagattgtttaacccttcgagctttgttggcatcttcttaatatgagtgcctttcagattaagatggcgcaaattgatgagtttg |
6592190 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
||||||| ||| || || || |||| ||||||||||||||||| ||||| || |||||||||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
6592189 |
tgaaaatctgaagggagttcggtcaatttaaaacattcttccaataagaatgtttgcaaattatacagcgtacaaatggaattaggtaagcttgcaatct |
6592090 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
| || | |||||||||||||||||||| ||||||||| || ||||| || ||| |||||| || ||||||||||||| | | ||||| ||| ||||||| |
|
|
| T |
6592089 |
cagttttagaaaggtctagatagcgcagaagctttaaatttcttatctcatcatctagctttacgagattgcaaccagaaagggacaacatccgcaaata |
6591990 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgcttctcaccatagccttgttcttct |
392 |
Q |
| |
|
||||| ||||||||||||| | ||||||||| ||||| |||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
6591989 |
ttttattcttgaaaacaaattatgctgcacactggtgcttatcttaaagcgtttttcaccatagccttgtgcttct |
6591914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 6723015 - 6722640
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
|||| ||||||||||||| ||| |||| || ||||| | ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
6723015 |
atcactcagcatctcaagcttgtctaatgctcctatcttcgttggcatcttcttaatatgagtgcctttcagattaagataacgtaaattgacgagtttg |
6722916 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
| | || ||| ||||||| ||||| |||||| || ||||||| |||||| || |||||||||| | ||||||||||||||||||||||||| ||| | |
|
|
| T |
6722915 |
tagatatctgaaggtagcttagtcaatttaaagcactcttccaataagagtgtctgcaaattatatagcatacaaatggaattaggtaagcttacaatgt |
6722816 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
| ||||| ||||||||||||||||||| ||||||||| || ||||| || || | |||||||||||| ||||||||| ||||||||| ||| ||||||| |
|
|
| T |
6722815 |
cagtgtaggaaaggtctagatagcgcaaaagctttaaattccttatctcatcggatagctctaagaggttgcaaccagagaaagacagcatccgcaaata |
6722716 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgcttctcaccatagccttgttcttct |
392 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| |||||||||||| | ||||| ||||| ||| ||||| |
|
|
| T |
6722715 |
ttttagtcttgaaaacaaattatgctgcacattggtgcttatcttaaagcgttggtcaccgtagccctgtgcttct |
6722640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 59 - 335
Target Start/End: Original strand, 7749137 - 7749413
Alignment:
| Q |
59 |
tggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaacattcttcc |
158 |
Q |
| |
|
|||||||||||||||||| ||||| || | |||||||||||||||||||||||||||| ||||| ||| || ||||||| || | | ||||||| |||| |
|
|
| T |
7749137 |
tggcatcttcttaatatgagtgccgtttagattaagatgacgtaaattgatgagtttgcaaaaatctgaaggcagctcagccaatctgaaacattgttcc |
7749236 |
T |
|
| Q |
159 |
agtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgc |
258 |
Q |
| |
|
| ||||| || |||||||||||| ||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||||| ||||||||| || | |
|
|
| T |
7749237 |
aacaagagtgtctgcaaattatacagcatacaaatggaattgggtaagcttgcaatctcagtgtgagaaaggtctagatagcgcagaagctttaaatttc |
7749336 |
T |
|
| Q |
259 |
ttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaatattttagtcttgaaaacaaa |
335 |
Q |
| |
|
|||| || || |||||||||| ||||||||||||| ||| ||||| | | |||||||||||||||||||||||||| |
|
|
| T |
7749337 |
ttatctcatcggctagctctacgagattgcaaccagagagggacaacacctgcaaatattttagtcttgaaaacaaa |
7749413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 6881609 - 6881959
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||| ||| |
|
|
| T |
6881609 |
atcagtcagcatctcaagattgtttaaccgttctatctttgttggcatcttcttaatatgagtgcctgtcagattaagatgacgtaaactgatgagcttg |
6881708 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
||||| || ||| || ||| || ||| ||||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6881709 |
caaaaatctgttggaagttcaagcaatttgaaacattcttccaataagagtgtctgtaaattatacaacatacaaatggaattaggtaagcttgcaatct |
6881808 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
| |||| |||||||| |||||||||| ||||||||| || ||||| | ||| ||||| |||||| ||||||||| |||| ||||| ||| ||||| |
|
|
| T |
6881809 |
cagtgtgcgaaaggtccagatagcgcagaagctttaaatttcttatcccatcatctagcagtaagaggttgcaaccagagaaggacaacatccgcaaaag |
6881908 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcg |
367 |
Q |
| |
|
||||| ||||||||||||| | || |||||| |||| |||||||||||| |
|
|
| T |
6881909 |
ttttactcttgaaaacaaattatgttgcacaacggtgcttatcttaaagcg |
6881959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 6916194 - 6916569
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||| | ||||||||||||||||||| |||||||||| ||||||||| ||||| |||| ||||||| |
|
|
| T |
6916194 |
atcagtcagcatctcaagattgtttaaccctcctatttttgttggcatcttcttaatatgagtgcctttcagattaagatggcgtaagttgacgagtttg |
6916293 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
||||| | | || |||||||||| ||| |||||||||||| |||||| || | |||||||| | |||||||| |||| | |||||||||||||||| |
|
|
| T |
6916294 |
ccaaaatctaaagggagctcagtcaatttccaacattcttccaataagagtgtctgtaaattatatatcatacaaacggaaatcggtaagcttgtaatct |
6916393 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
| ||||| ||||| ||||||||||||| ||||||||| || ||||| || || |||||||| ||||| |||||||| |||||| || ||| ||||||| |
|
|
| T |
6916394 |
cagtgtacgaaagatctagatagcgcagaagctttaaatttcttatctcatctgctagctccgagagactgcaaccatggaaagataacatccgcaaata |
6916493 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgcttctcaccatagccttgttcttct |
392 |
Q |
| |
|
|| |||||||||| ||||| | | ||||||| | || ||||||| |||| || ||||||||||||||| ||||| |
|
|
| T |
6916494 |
ttgtagtcttgaatacaaattacgttgcacatcgatgcctatcttatagcgtttgtcaccatagccttgtgcttct |
6916569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 89 - 286
Target Start/End: Original strand, 5279818 - 5280012
Alignment:
| Q |
89 |
attaagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacata |
188 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| || |||||||||| | || ||| || || |||||| || ||||||||||||||| | |
|
|
| T |
5279818 |
attaagatgacgtaaattgacaagtttgtaaaaatttgaagggagctcagtcaatcta---catcctagcaataagagtgtctgcaaattatacaacaca |
5279914 |
T |
|
| Q |
189 |
caaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagatt |
286 |
Q |
| |
|
|||||||||| ||||| ||||||||| | |||||||||||||||||||| | || |||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
5279915 |
caaatggaatcaggtaggcttgtaattccagtgtaagaaaggtctagataacacagaagctttaagttgcttatctcgtcagctagctcggagagatt |
5280012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 335
Target Start/End: Original strand, 8453813 - 8454058
Alignment:
| Q |
90 |
ttaagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatac |
189 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| || ||||| |||| || | |||| ||||||| ||||| || ||||||||| |||||||| |
|
|
| T |
8453813 |
ttaagatgacgtaaattgacgagtttggaaaaatttgaagggagctctgtcaattcacaacagccttccagcaagagtgtttgcaaattatgcaacatac |
8453912 |
T |
|
| Q |
190 |
aaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgca |
289 |
Q |
| |
|
|||||| || |||||| || |||| |||||||| ||||||||||| |||| ||| ||||| |||||||| || ||| |||| ||||||||| ||| |
|
|
| T |
8453913 |
aaatggtatcaggtaatatttcaatccatgtgtaagagaggtctagataacgcaaaagttttaaattgcttatctcatcaactagttctaagagaccgca |
8454012 |
T |
|
| Q |
290 |
accacagaaagacaatatcagcaaatattttagtcttgaaaacaaa |
335 |
Q |
| |
|
||| | || || || ||| ||||| | |||||||||||||||||| |
|
|
| T |
8454013 |
acctctaaatgataacatccgcaaaaaatttagtcttgaaaacaaa |
8454058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 89 - 286
Target Start/End: Original strand, 5262942 - 5263135
Alignment:
| Q |
89 |
attaagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacata |
188 |
Q |
| |
|
||||||||| |||||||||| |||||| | ||||| ||| || ||||| |||| |||| ||| || || |||||| || ||||||||||||||| | |
|
|
| T |
5262942 |
attaagatggcgtaaattgacgagtttataaaaatctgaagggagctccgtcaattta---catcctagcaataagagtgtctgcaaattatacaacaca |
5263038 |
T |
|
| Q |
189 |
caaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagatt |
286 |
Q |
| |
|
||||||||| ||||| |||||||||| | |||||||||||||||||||| |||| |||| |||||||||| || |||||||||||||| ||||||| |
|
|
| T |
5263039 |
taaatggaatcaggtaggcttgtaatcccagtgtaagaaaggtctagataacgcagaagc-ttaagttgctgatctcgtcagctagctcggagagatt |
5263135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 277
Target Start/End: Complemental strand, 6480853 - 6480671
Alignment:
| Q |
92 |
aagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaa |
191 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||||| || | | | ||| || |||| || |||||||||||||||||||| |
|
|
| T |
6480853 |
aagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattcacacc---cttgcaacaagattgtttgcaaattatacaacatacaa |
6480757 |
T |
|
| Q |
192 |
atggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctc |
277 |
Q |
| |
|
||| || |||||||||||||||||| ||| |||||||||| |||||||||| ||| |||| |||||||| || ||| ||||||| |
|
|
| T |
6480756 |
atgctatcaggtaagcttgtaatctcagtgaaagaaaggtcaagatagcgcaaaagttttatattgcttatctcatcaactagctc |
6480671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 6555339 - 6555179
Alignment:
| Q |
92 |
aagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaa |
191 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||||| || | |||| |||| | ||||| || |||||||||||||||||||| |
|
|
| T |
6555339 |
aagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgataacagtcttttaacaagagtgtttgcaaattatacaacatacaa |
6555240 |
T |
|
| Q |
192 |
atggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagcttta |
252 |
Q |
| |
|
|||| || |||||||||| |||| | ||||| | |||||||||||| |||| ||| |||| |
|
|
| T |
6555239 |
atggtatcaggtaagcttttaataccagtgtatgtaaggtctagataacgcaaaagtttta |
6555179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 8569872 - 8569665
Alignment:
| Q |
51 |
atctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaac |
150 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| | ||||||||| ||||||||| ||||||| ||||| ||| || |||| |||| || | ||| |
|
|
| T |
8569872 |
atctgctttggcatcttcttaatatcagtgccttttagattaagatggcgtaaattggcaagtttgtaaaaatatgaagggagcttggtcaattcagaac |
8569773 |
T |
|
| Q |
151 |
attcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctt |
250 |
Q |
| |
|
||||||||| || || || | |||||||||||| |||||||||||| ||| || ||| ||||||| ||| || || ||||||||||||| |||||| |
|
|
| T |
8569772 |
attcttccaatattagtgtttgtaaattatacaacttacaaatggaatcaggcaaccttttaatctctgtgcgagtcagatctagatagcgcaaaagctt |
8569673 |
T |
|
| Q |
251 |
taagttgc |
258 |
Q |
| |
|
||| |||| |
|
|
| T |
8569672 |
taaattgc |
8569665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 8588978 - 8589088
Alignment:
| Q |
174 |
aaattatacaacatacaaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagcta |
273 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| |||| ||| ||||| |||||||| || | | ||| |
|
|
| T |
8588978 |
aaattatacaacatacaaatggtatcaggtaagcttgtaatcaaagtgtaagaaaggtctagataacgcaaaagttttaaattgcttatctcattaacta |
8589077 |
T |
|
| Q |
274 |
gctctaagaga |
284 |
Q |
| |
|
||||| ||||| |
|
|
| T |
8589078 |
gctctgagaga |
8589088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 284
Target Start/End: Original strand, 6946433 - 6946625
Alignment:
| Q |
92 |
aagatgacgtaaattgatgagtttgtga-aaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacataca |
190 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||| || ||||| |||| || ||| ||| || |||||| || ||||||||||||||||||| |
|
|
| T |
6946433 |
aagatgacgtaaattgacgagttt-tgagaaatttgaagggagctctgtcaacttcctacagccttgcaataagagtgtttgcaaattatacaacataca |
6946531 |
T |
|
| Q |
191 |
aatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagaga |
284 |
Q |
| |
|
||| |||| ||||| |||||||| | |||| ||||||||||||||| |||| ||||||||| |||||||| || ||| |||||||| ||||| |
|
|
| T |
6946532 |
aatagaatcgggtaaccttgtaatattagtgtgagaaaggtctagataacgcaaaagctttaaattgcttatctcatcaactagctctgagaga |
6946625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 292
Target Start/End: Original strand, 6735118 - 6735318
Alignment:
| Q |
92 |
aagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaa |
191 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||| || |||||||||| || | ||| ||| | ||||| || | |||||||||||||||||| |
|
|
| T |
6735118 |
aagatgacataaattgacgagtttggaaaaatttgaagggagctcagtcaattgacgacaaccttttaacaagagtgtttgtaaattatacaacatacaa |
6735217 |
T |
|
| Q |
192 |
atggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaac |
291 |
Q |
| |
|
|||| || |||||||||| |||||| ||||| |||||||||||||| |||| ||| ||||| |||||||| || || | |||||| |||||| ||||| |
|
|
| T |
6735218 |
atggtatcaggtaagcttctaatcttagtgtatgaaaggtctagataacgcaaaagttttaaattgcttatctcatccacaagctctgagagatagcaac |
6735317 |
T |
|
| Q |
292 |
c |
292 |
Q |
| |
|
| |
|
|
| T |
6735318 |
c |
6735318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 331
Target Start/End: Complemental strand, 6521033 - 6520794
Alignment:
| Q |
92 |
aagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaa |
191 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||||| || | || ||| | ||||| || | |||||||||| ||||||| |
|
|
| T |
6521033 |
aagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgatggcagccttttaacaagagtgtttgtaaattatacagcatacaa |
6520934 |
T |
|
| Q |
192 |
atggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaac |
291 |
Q |
| |
|
|||| || ||||||||||| ||||| ||||||||||||||||||| |||| ||| ||||| |||||||| || || | |||||| ||||| ||||| |
|
|
| T |
6520933 |
atggtatcaggtaagcttgcaatcttattgtaagaaaggtctagataacgcaaaagttttaaattgcttatctcatccacaagctctgagagaaggcaac |
6520834 |
T |
|
| Q |
292 |
cacagaaagacaatatcagcaaatattttagtcttgaaaa |
331 |
Q |
| |
|
||| || | | ||| ||||| |||||||||||||||| |
|
|
| T |
6520833 |
cactaaatgttagcatccgcaaacattttagtcttgaaaa |
6520794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 6850245 - 6850302
Alignment:
| Q |
196 |
aattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaa |
253 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6850245 |
aattaggtatgcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaa |
6850302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 5297970 - 5298073
Alignment:
| Q |
173 |
caaattatacaacatacaaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagct |
272 |
Q |
| |
|
||||||||||||| | || ||||||| |||||||||||| | | |||| |||||| || ||||| |||| |||||||||||||||||| || || ||| |
|
|
| T |
5297970 |
caaattatacaacgtgcagatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggct |
5298069 |
T |
|
| Q |
273 |
agct |
276 |
Q |
| |
|
|||| |
|
|
| T |
5298070 |
agct |
5298073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 6527773 - 6527724
Alignment:
| Q |
92 |
aagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtca |
141 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||||| |
|
|
| T |
6527773 |
aagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtca |
6527724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 4389716 - 4389641
Alignment:
| Q |
187 |
tacaaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttat |
262 |
Q |
| |
|
|||||||||||| ||| || ||| |||||| ||| ||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
4389716 |
tacaaatggaatcaggcaaccttttaatctttgtgagagataggtctagataacgcataagctttaaattgcttat |
4389641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 6449588 - 6449546
Alignment:
| Q |
172 |
gcaaattatacaacatacaaatggaattaggtaagcttgtaat |
214 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
6449588 |
gcaaattatacaacacacaaatggtatcaggtaagcttgtaat |
6449546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 4389850 - 4389761
Alignment:
| Q |
50 |
tatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagt |
139 |
Q |
| |
|
|||||| |||||||||||||| ||| | ||||||| || || |||||||||||| || | ||||||| ||||| ||| || |||||||| |
|
|
| T |
4389850 |
tatctcttttggcatcttctttataagagtgccttccagatcaagatgacgtaagtttgtaagtttgtaaaaatctgaagggagctcagt |
4389761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 5267296 - 5267384
Alignment:
| Q |
174 |
aaattatacaacatacaaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttat |
262 |
Q |
| |
|
|||||||||| |||||||||||| ||| || ||| |||||| ||| ||| ||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
5267296 |
aaattatacaggttacaaatggaatcaggcaaccttttaatctttgtgagagacaggtctagataacgcaaaagctttaaattgcttat |
5267384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 35141305 - 35140959
Alignment:
| Q |
17 |
atcagtcagcatctcaagattgattaattcttttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttg |
116 |
Q |
| |
|
||||||| ||||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35141305 |
atcagtcggcatctcaagattgattaaccctctcatctcctttggcat-ttcttaatatgtgtgcctttcaaattaagatgacataaattgatgagtttg |
35141207 |
T |
|
| Q |
117 |
tgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
216 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35141206 |
cgaaaatttgatgggagctcaatcggtttaaaacattcttccagtaagagcgtatgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
35141107 |
T |
|
| Q |
217 |
cggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaaccacagaaagacaatatcagcaaata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||| |||||||||||| | |||||||||| ||| ||||||| |
|
|
| T |
35141106 |
cggtgtaagaaaggtctagatagcgcataagctttaagtttcctatctcttcagctagctctgagagattgcaacaagagaaagacaacatccgcaaata |
35141007 |
T |
|
| Q |
317 |
ttttagtcttgaaaacaaactctgctgcacattggtggatatcttaaag |
365 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
35141006 |
-tttagtcttgaaaacaaactctgatgcacgttggtggatatcttaaag |
35140959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 92 - 292
Target Start/End: Complemental strand, 8378 - 8178
Alignment:
| Q |
92 |
aagatgacgtaaattgatgagtttgtgaaaatttgatggtagctcagtcagtttaaaacattcttccagtaagagcgtacgcaaattatacaacatacaa |
191 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||||| || | ||| ||| | ||||| || | |||||||||||||||||| |
|
|
| T |
8378 |
aagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgacgacaaccttttaacaagagtgtttgtaaattatacaacatacaa |
8279 |
T |
|
| Q |
192 |
atggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagttgcttatttcgtcagctagctctaagagattgcaac |
291 |
Q |
| |
|
|||| || |||||||||| |||||| ||||| |||||||||||||| |||| ||| ||||| |||||||| || || | |||||| |||||| ||||| |
|
|
| T |
8278 |
atggtatcaggtaagcttctaatcttagtgtatgaaaggtctagataacgcaaaagttttaaattgcttatctcatccacaagctctgagagatagcaac |
8179 |
T |
|
| Q |
292 |
c |
292 |
Q |
| |
|
| |
|
|
| T |
8178 |
c |
8178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 13353 - 13410
Alignment:
| Q |
196 |
aattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaa |
253 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13353 |
aattaggtatgcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaa |
13410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 6574238 - 6574165
Alignment:
| Q |
50 |
tatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgatgagtttgtgaaaat |
123 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||| |||||||||||||||| || |||||||| ||||| |
|
|
| T |
6574238 |
tatcttctttggcatcttcttaatatcagtgctattcatattaagatgacgtaaactgtcgagtttgtaaaaat |
6574165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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