View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_13 (Length: 356)
Name: NF7559_low_13
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 1135935 - 1136226
Alignment:
| Q |
18 |
ataatgtgaaaagaagtgggcataagaaaatcataatttataaaatattaaaagtatgataaaaatggttactcgcannnnnnnnnnataaaaacagaac |
117 |
Q |
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| T |
1135935 |
ataatgtgaaaagaagtgggcataagaaaatcataatttataaaatattaaaagtatgataaaaatggttactcgcattttttttttataaaaacagaac |
1136034 |
T |
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| Q |
118 |
gctgcatcaccacgcattgagttaaacgaagattaagctattgcattttgcacttcaggaaacaaaagtgctttctacaattgcgctttctacggatttc |
217 |
Q |
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| T |
1136035 |
gctgcatcaccacgcattgggttaaacgaagattaagctattgcatttttcacttcaggaaacaaaagtgctttctacaattgcgctttctacggatttc |
1136134 |
T |
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| Q |
218 |
aagacacactgtacgatcatcatgact---attactttaaaagctgctttattcaaggctctctcgatttcatctctagccttgagagatcc |
306 |
Q |
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| T |
1136135 |
aagacacactgtacgatcatcatgacttgcattactttaaaagctgctttattcaaggctctctcgatttcatctttagccttaagagatcc |
1136226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 289
Target Start/End: Original strand, 8621753 - 8622003
Alignment:
| Q |
43 |
gaaaatcataatttataaaata-ttaaaagtatgataaaaatggttactcgcannnnnnnnnnataaaaacagaacgctgcatcaccacgcattgagtta |
141 |
Q |
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| T |
8621753 |
gaaaatcataatttataaaataattaaaaggatgataaaaatggttacttacaatatttttttattaaaacagaacacggcatcacctcgtattgggtca |
8621852 |
T |
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| Q |
142 |
aacgaagattaagctattgcattttgcacttcaggaaacaaaagtgctttctacaattgcgctttctacggatttcaagacacactgtacgatcatcatg |
241 |
Q |
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| T |
8621853 |
aatgatgatcaagccgttgcacttcgcacttcaggaaacaaaagtgcgttttacaactgctcgttttacggatttcaggacacattatatgatcatcagg |
8621952 |
T |
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| Q |
242 |
act---attactttaaaagctgctttattcaaggctctctcgatttcatct |
289 |
Q |
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| T |
8621953 |
ggttgcattattttgaaaactgctttattcaaggctccgtggatttcatct |
8622003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 1136244 - 1136287
Alignment:
| Q |
303 |
atccatggaaggaatgagagaaatatagcaaatctctttatatt |
346 |
Q |
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| T |
1136244 |
atccatggaaggaatgagagaaatatagcaaatctctttatatt |
1136287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 25432189 - 25432146
Alignment:
| Q |
303 |
atccatggaaggaatgagagaaatatagcaaatctctttatatt |
346 |
Q |
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| T |
25432189 |
atccatggaaggaatgagagaaatgtagcaaagttctttatatt |
25432146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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