View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_15 (Length: 347)
Name: NF7559_low_15
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 10990690 - 10990357
Alignment:
| Q |
1 |
ataacaattctgagtaca----gttagctaggtaaaaattacctttgtggtttttggcgaagcaatctacttccttgttggtagtactagtagtattctt |
96 |
Q |
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| T |
10990690 |
ataacaattctgagtacaaacagttagctaggtaaaaattacctttgtggtttttggcgaagcaatctacttccttgttggtagtactagtagtattctt |
10990591 |
T |
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| Q |
97 |
ccagccacatctgtttccttttgattcacaatgtttgcaattaggctcagaccacatcaaacgaagaaacttttggtttggaacagaacgagaaatgctg |
196 |
Q |
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| T |
10990590 |
ccagccacatctgtttccttttgattcacaatgtttgcaattaggctcagaccacatcaaacgaagaaacttttggtttggaacagaacgagaaatgctg |
10990491 |
T |
|
| Q |
197 |
attaatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgattgattcagaagagaggataacgtatatttgagaggttgatgtactta |
296 |
Q |
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| T |
10990490 |
attaatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgattgattcagaagagaggataacgtatatttgagaggttgatgtactta |
10990391 |
T |
|
| Q |
297 |
aacacggaaccaaataagaatttatgtcatctct |
330 |
Q |
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| T |
10990390 |
aacacggaaccaaataagaatttatgtcatctct |
10990357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 41 - 317
Target Start/End: Complemental strand, 10929558 - 10929273
Alignment:
| Q |
41 |
ttgtggtttttggcgaagcaatctacttccttgttggtagta---ctagtagtattcttccagccacatctgtttccttttgattcacaatgtttgcaat |
137 |
Q |
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| T |
10929558 |
ttgttgtttttggcaaaacaatatacttccttgttggtactattactagtagtattcttccagtcacatctttttccttctgattcacagtgtttacaat |
10929459 |
T |
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| Q |
138 |
taggctcagaccacatcaaacgaagaaacttttggtttggaa------cagaacgagaaatgctgattaatgaaacattaaacattttggtgcaaaaaga |
231 |
Q |
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| T |
10929458 |
taggctcagaccacttcaaacgaagaaaatttttctttggaatagttccggaatatgaagggcccattactgaaacattatacattttggtgcaaaacgt |
10929359 |
T |
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| Q |
232 |
aagagggaggtagtcgattgattcagaagagaggataacgtatatttgagaggttgatgtacttaaacacggaaccaaataagaat |
317 |
Q |
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| T |
10929358 |
gagaggaaagaatttgataggttcataagcagggatagcgtatgtttgagaggttgaagtgcttagacacggaaccaaataggaat |
10929273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 11025087 - 11024968
Alignment:
| Q |
47 |
tttttggcgaagcaatctacttccttgttggtagtactagta---gtattcttccagccacatctgtttccttttgattcacaatgtttgcaattaggct |
143 |
Q |
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| T |
11025087 |
tttttggggaaacaatctacttccttgttggtactattaccaacagtattcttccaaccacatatttttccttttgattcacaatgtttacaactaggct |
11024988 |
T |
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| Q |
144 |
cagaccacatcaaacgaaga |
163 |
Q |
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| T |
11024987 |
cagaccacatcaaacgaaga |
11024968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 11040100 - 11040018
Alignment:
| Q |
81 |
tactagtagtattcttccagccacatctgtttccttttgattcacaatgtttgcaattaggctcagaccacatcaaacgaaga |
163 |
Q |
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| T |
11040100 |
tactagtagtatttttccaaccacatatttttccttttgattcacagtgtttacaattaggctcagaccacgtcaaacgaaga |
11040018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 11040002 - 11039960
Alignment:
| Q |
200 |
aatgaaacattaaacattttggtgcaaaaagaaagagggaggt |
242 |
Q |
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| T |
11040002 |
aatgaaacattaaacattttggtgcaaaacgaaagaggaaggt |
11039960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 11024859 - 11024807
Alignment:
| Q |
278 |
tgagaggttgatgtacttaaacacggaaccaaataagaatttatgtcatctct |
330 |
Q |
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| T |
11024859 |
tgagaggttgaggtacttagacatggaaccaaataagaatctatgtcgtctct |
11024807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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