View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_16 (Length: 340)
Name: NF7559_low_16
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 25 - 321
Target Start/End: Complemental strand, 5434652 - 5434355
Alignment:
| Q |
25 |
atggtgttgtggtttttctgcattaaaaagaattaagttttaggctattttctatatttgctttcattgttgattgtttctgattttgctttccatgaag |
124 |
Q |
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| T |
5434652 |
atggtgttgtggtttttctgcattaaaaagaattaagttttaggctattttctatatttgctttcattgttgattgtttctgattttgctttccatgaag |
5434553 |
T |
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| Q |
125 |
gaagacaggctgttcttttcatgtgctttaatgttgttctacaaaagggttttgacatttttcatccatattcaagtgtggaaattcattgtccttcaca |
224 |
Q |
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| T |
5434552 |
gaagacaggctgttcttttcatgtgctttaatgttgttctacaaaagggttttgacatttttcatccatattcaagtttggaaattcattgtccttcaca |
5434453 |
T |
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| Q |
225 |
atagatcatcctggacctgcttcgtagc-nnnnnnnaaggagatcttcttgcggtgtgtatatttctatcaagggttttaacattttcatctatattt |
321 |
Q |
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| T |
5434452 |
atagatcatcctggacctgcttcgtagcttttttctaaggagatcttcttgcggtgtgtatatttctatcaagggttttaacattttcatctatattt |
5434355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 536210 - 536151
Alignment:
| Q |
27 |
ggtgttgtggtttttctgcattaaaaagaattaagttttaggctattttctatatttgct |
86 |
Q |
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| T |
536210 |
ggtgttgtggtttttctgcactaaaaacaatgaagttttagactctttgctatatttgct |
536151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 555311 - 555385
Alignment:
| Q |
38 |
ttttctgcattaaaaagaattaag-ttttaggctattttctatatttgctttcattgttgattgtttctgatttt |
111 |
Q |
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| T |
555311 |
ttttctgcattaaaaagaatgaagtttttagcctgttttccatatttgctacctttgttgtttgcttctgatttt |
555385 |
T |
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