View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_17 (Length: 325)
Name: NF7559_low_17
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 42232979 - 42233270
Alignment:
| Q |
22 |
tggagaagattagtttaggtgagtggtttgatttcttggaagtttgtttgccgaaacagatacatgatgaaacgaaagagatcattgattccatgagaca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42232979 |
tggagaagattagtttaggtgagtggtttgatttcttggaagtttgtttgccgaaacagatacatgatgaaacgaaagagatcattgattccatgagaca |
42233078 |
T |
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| Q |
122 |
aaaagccgagggactccacgagtacgtcataatgtatcagaatcagcaagctggaactgccactgaatgctagtatatgtagttaactgatagttatttc |
221 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42233079 |
aaaagccgagggactccgcgagtacgtcataatgtatcagaatcagcaagctggaactgccactgaatgctagtatatgtagttaactgatagttatttc |
42233178 |
T |
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| Q |
222 |
agcattagcaccactgttgttagatagttagattttgttaactgaatgactttttagttagcactcttttgttactctctccagaatatatt |
313 |
Q |
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| T |
42233179 |
agcattagcaccaatgttgtcagatagttagattttgttaactgaatgactttttagttagcactcttttgttactctctccagaatatatt |
42233270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 28945684 - 28945392
Alignment:
| Q |
22 |
tggagaagattagtttaggtgagtggtttgatttcttggaagtttgtttgccgaaacagatacatgatgaaacgaaagagatcattgattccatgagaca |
121 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||| |
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| T |
28945684 |
tggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaacagatacatgatgaaacggaagagattattgattccatgacaca |
28945585 |
T |
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| Q |
122 |
aaaagccgagggactccacgagtacgtcataatgtatcagaatcagcaagctggaactgccactgaatgctagtatatgtagttaactgatagttattt- |
220 |
Q |
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| T |
28945584 |
aaaagccgagagactccgcgagtacgtcataatgtatcagaatcagaaagctggaactgccactgaatgctagtatatgtagttaactgatagttatttg |
28945485 |
T |
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| Q |
221 |
cagcattagcaccactgttgttagatagttagattttgttaactgaatgactttttagttagcactcttttgttactctctccagaatatatt |
313 |
Q |
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||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |
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| T |
28945484 |
aagcattagcacaactgttgttaggtagttagaatttgttaactgaatgagtttttagtcagcactcttttgttactctctccataatatatt |
28945392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 34823047 - 34822755
Alignment:
| Q |
22 |
tggagaagattagtttaggtgagtggtttgatttcttggaagtttgtttgccgaaacagatacatgatgaaacgaaagagatcattgattccatgagaca |
121 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||| |
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| T |
34823047 |
tggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaacagatacatgatgaaacggaagagattattgattccatgaaaca |
34822948 |
T |
|
| Q |
122 |
aaaagccgagggactccacgagtacgtcataatgtatcagaatcagcaagctggaactgccactgaatgctagtatatgtagttaactgatagttattt- |
220 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34822947 |
aaaagccgagagactccgcgagtacgtcataatgtatcagaatcagaaagctggaactgccactgaatgctagtatatgtagttaactgatagttatttg |
34822848 |
T |
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| Q |
221 |
cagcattagcaccactgttgttagatagttagattttgttaactgaatgactttttagttagcactcttttgttactctctccagaatatatt |
313 |
Q |
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||||||||||| | ||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34822847 |
aagcattagcacaagtgttgttaggtagttagaatttgttaactgaatgagtttttagtcagcactcttttgttactctctccagaatatatt |
34822755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 34826116 - 34826000
Alignment:
| Q |
22 |
tggagaagattagtttaggtgagtggtttgatttcttggaagtttgtttgccgaaacagatacatgatgaaacgaaagagatcattgattccatgagaca |
121 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||| |||| || |||||||| |||||||| |
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| T |
34826116 |
tggagaagatgagtttaggtgagtggtttgatttcttggaggtttatttgccaaaacaaatacatgatgaaacggaagatattattgattcaatgagaca |
34826017 |
T |
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| Q |
122 |
aaaagccgagggactcc |
138 |
Q |
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|||||| ||| |||||| |
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| T |
34826016 |
aaaagctgagagactcc |
34826000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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