View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7559_low_18 (Length: 320)
Name: NF7559_low_18
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_18 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 49389183 - 49389494
Alignment:
| Q |
9 |
aatattacaccaaatattttatgttgtatcttaatatatatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagattatttctaag |
108 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49389183 |
aatattacaccaaatattttacggtgtatcttaatatatatctcttgagtttagcaagtgccacaaaattatattcaagtctacttagattatttctaag |
49389282 |
T |
|
| Q |
109 |
caacaatatgacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatctctttttaaaat |
208 |
Q |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49389283 |
cgacaatatcacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatctctttttaaaat |
49389382 |
T |
|
| Q |
209 |
gaatgtcctagtaaggatccaaatagaccccagaagattattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgtgaagc |
308 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49389383 |
gaatgtcatagtaaggatccaaatagacctcagaagattattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgagaagc |
49389482 |
T |
|
| Q |
309 |
acgctccaaatt |
320 |
Q |
| |
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| |||| ||||| |
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|
| T |
49389483 |
aagctcaaaatt |
49389494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 24188528 - 24188460
Alignment:
| Q |
21 |
aatattttatgttgtatcttaatatatatctcttgagtttagaaagtgccaaaaaattatattcaagtc |
89 |
Q |
| |
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||||||||| | ||||||| |||||||||||| |||||||| |||||||| |||| ||||| |||||| |
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| T |
24188528 |
aatattttaaggtgtatctaaatatatatctcatgagtttatcaagtgccacaaaaatatatacaagtc |
24188460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 10945570 - 10945881
Alignment:
| Q |
9 |
aatattacaccaaatattttatgttgtatcttaatatatatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagattatttctaag |
108 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
10945570 |
aatattacaccaaatattttacgatgtatcttaatatatatctcttgagtttagcaagtgccacaaaattatattcaggtctacttagattatttctaag |
10945669 |
T |
|
| Q |
109 |
caacaatatgacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatctctttttaaaat |
208 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
10945670 |
cgacaatatcacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatctccttttaaaat |
10945769 |
T |
|
| Q |
209 |
gaatgtcctagtaaggatccaaatagaccccagaagattattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgtgaagc |
308 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10945770 |
gaatgtcatagtaaggatccaaatagaccacaaaagataattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgagaagc |
10945869 |
T |
|
| Q |
309 |
acgctccaaatt |
320 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
10945870 |
aagctcaaaatt |
10945881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 10939699 - 10940012
Alignment:
| Q |
9 |
aatattacaccaaatattttatgttgtatcttaatat--atatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagattatttcta |
106 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
10939699 |
aatattacaccaaatattttacggtgtatcttaatatatatatctcttgagtttagcaagtgccacaaaattatattcagatctacttagattatttcta |
10939798 |
T |
|
| Q |
107 |
agcaacaatatgacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatctctttttaaa |
206 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10939799 |
agcgacaatatcacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatctctttttaaa |
10939898 |
T |
|
| Q |
207 |
atgaatgtcctagtaaggatccaaatagaccccagaagattattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgtgaa |
306 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10939899 |
atgaatgtcatagtaaggatccaaatagaccccagaagatcattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgagaa |
10939998 |
T |
|
| Q |
307 |
gcacgctccaaatt |
320 |
Q |
| |
|
||| |||| ||||| |
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|
| T |
10939999 |
gcaagctcaaaatt |
10940012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 24043228 - 24043541
Alignment:
| Q |
9 |
aatattacaccaaatattttatgttgtatcttaatat--atatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagattatttcta |
106 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
24043228 |
aatattacaccaaatattttacggtgtatcttaatatatatatctcttgagtttagcaagtgccacaaaattatattcagatctacttagattatttcta |
24043327 |
T |
|
| Q |
107 |
agcaacaatatgacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatctctttttaaa |
206 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24043328 |
agcgacaatatcacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatctctttttaaa |
24043427 |
T |
|
| Q |
207 |
atgaatgtcctagtaaggatccaaatagaccccagaagattattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgtgaa |
306 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24043428 |
atgaatgtcatagtaaggatccaaatagaccccagaagatcattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgagaa |
24043527 |
T |
|
| Q |
307 |
gcacgctccaaatt |
320 |
Q |
| |
|
||| |||| ||||| |
|
|
| T |
24043528 |
gcaagctcaaaatt |
24043541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 13817577 - 13817306
Alignment:
| Q |
9 |
aatattacaccaaatattttatgttgtatcttaatatatatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagattatttctaag |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13817577 |
aatattacaccaaatattttacagtgtatcttaatatatatctcttgagtttagcaagtgccacaaaattatattcagatctacttagattatttctaag |
13817478 |
T |
|
| Q |
109 |
caacaatatgacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatctctttttaaaat |
208 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13817477 |
cggcaatatcacacttgttttactcatacacatataggtatcacagtggatttcttaataacatcttgttacggagtacacttccatcactttttaaaat |
13817378 |
T |
|
| Q |
209 |
gaatgtcctagtaaggatccaaatagaccccagaagattattttattttaataatcttaaaagaacaatgct |
280 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13817377 |
gaatgtcatagtaaggatccaaatagaccccagaagatcattttattttaataatcttaaaagaacaatgct |
13817306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 297
Target Start/End: Complemental strand, 14656449 - 14656197
Alignment:
| Q |
42 |
atatatatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagattatttctaagcaacaatatg------acacttgttttactcat |
135 |
Q |
| |
|
|||||||||| |||||||| ||| |||| |||| |||| || ||||||||||||||||||||||| |||| ||| |||||||||||| ||| |
|
|
| T |
14656449 |
atatatatcttatgagtttatcaagagccataaaac-atatacacgtctacttagattatttctaagcgacaacatgtctatcacacttgttttatacat |
14656351 |
T |
|
| Q |
136 |
acacatataggtatcacagtggatttcttaataacatctt-gttacggagtacacttccatctctttttaaaatgaatgtcctagtaaggatccaaatag |
234 |
Q |
| |
|
||| |||| |||| | ||||||||||| |||||||||| ||||| || ||||||||||| |||| |||||||||||||| |||| |||||| |
|
|
| T |
14656350 |
acatatat--gtatgatcgtggatttcttcataacatctttgttactgaatacacttccatttcttattaaaatgaatgtcatagt--------aaatag |
14656261 |
T |
|
| Q |
235 |
accccagaagatta-ttttattttaataatcttaaaagaacaatgctgcaacgaatgttagatc |
297 |
Q |
| |
|
| || ||||||| | |||||||||||||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
14656260 |
atcctagaagatcatttttattttaataatcttaaaaaaacaatgttgcaagacatgttagatc |
14656197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 26708161 - 26708239
Alignment:
| Q |
36 |
atcttaatatatatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagattatttctaagcaacaa |
114 |
Q |
| |
|
|||| ||||| |||||| |||||||| |||||||| |||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
26708161 |
atctcaatatgtatctcatgagtttaacaagtgccacaaaaatatattcagatctacttagattatttctaagcgacaa |
26708239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 26977895 - 26977973
Alignment:
| Q |
36 |
atcttaatatatatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagattatttctaagcaacaa |
114 |
Q |
| |
|
|||| ||||| |||||| |||||||| |||||||| |||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
26977895 |
atctcaatatgtatctcatgagtttaacaagtgccacaaaaatatattcagatctacttagattatttctaagcgacaa |
26977973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 27066049 - 27065970
Alignment:
| Q |
21 |
aatattttatgttgtatcttaatatatatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagatta |
100 |
Q |
| |
|
||||||||| | ||||||| |||||||||||| | ||||||| ||||| || || | ||| |||||||||||||| |||| |
|
|
| T |
27066049 |
aatattttacggtgtatctcaatatatatctcataagtttagcaagtgacacaacaatatgttcaagtctacttaaatta |
27065970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 27087152 - 27087073
Alignment:
| Q |
21 |
aatattttatgttgtatcttaatatatatctcttgagtttagaaagtgccaaaaaattatattcaagtctacttagatta |
100 |
Q |
| |
|
||||||||| | ||||||| |||||||||||| | ||||||| ||||| || || | ||| |||||||||||||| |||| |
|
|
| T |
27087152 |
aatattttacggtgtatctcaatatatatctcataagtttagcaagtgacacaacaatatgttcaagtctacttaaatta |
27087073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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