View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_20 (Length: 264)
Name: NF7559_low_20
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 49303190 - 49302941
Alignment:
| Q |
15 |
atgtgctgggtgaaaatactaaaataacaataggcatattaacatttatcattaaaaaacatgattatttaagatttctcaacggggtaatgtgacgata |
114 |
Q |
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| T |
49303190 |
atgtggtgggtgaaaatactaaaataacaataggcatattaacatttatcattaaaaaacatgattatttaagatttctcaacggggtaatgtgacgata |
49303091 |
T |
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| Q |
115 |
tttttcatttctttgtaatatatcttttgattttcatatatgcaaatccgtaaaataagttgacagagaatgaaggcaggtcaaacggggtaaacatttt |
214 |
Q |
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| T |
49303090 |
tttttcatttctttgtaatatatcttttgattttcatatatgcaaatccgtaaaataagttgacagagaatgaaggcaggtcaaacggggtaaacatttt |
49302991 |
T |
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| Q |
215 |
gaaatgtaccaacactaacctgagacagagataaatgactgcatgaacat |
264 |
Q |
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| T |
49302990 |
gaaatgtaccaacactaacctgagacagagataagtgactgcatgaacat |
49302941 |
T |
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