View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7559_low_22 (Length: 260)
Name: NF7559_low_22
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 39766513 - 39766441
Alignment:
| Q |
13 |
aatatatacgatgatattgagtcatggttgactcatcaagatgatttcctaatcaatatacattgatgtgtca |
85 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39766513 |
aatatatacaatgatattgagtcatggttaactcatcaagatgatttcctaatcaatatacattgatgtgtca |
39766441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 18306522 - 18306452
Alignment:
| Q |
13 |
aatatatacgatgatattgagtcatggttgactcatcaagatgatttcctaatcaatatacattgatgtgtca |
85 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18306522 |
aatatatacgatgat--tgagtcatggttgactcatcaagatgatttcctaatcaatatacattgatgtgtca |
18306452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 18306338 - 18306306
Alignment:
| Q |
211 |
gatctttaattattttctttccatggtgcattt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18306338 |
gatctttaattattttctttccatggtgcattt |
18306306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University