View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_24 (Length: 248)
Name: NF7559_low_24
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 52112673 - 52112434
Alignment:
| Q |
10 |
agaagaagcggttcataatcttttatttgccacatgttttaattcatttggtgggatgaagannnnnnn-cctaatttgttgaagtggattggacgtggt |
108 |
Q |
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| T |
52112673 |
agaagaagcggttcataatcttttatttgccacatgttttaattcatttggtgggatgaagattttttttcctaatttgttgaagtggattggacgtggt |
52112574 |
T |
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| Q |
109 |
ggtgttaatctacaccgtaaattagcagaagagattcgatctgttgttaaatcaaatggcggaagagtgacaatggcgggggtgggaaatatggcggtga |
208 |
Q |
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| T |
52112573 |
ggtgttaatctacaccgtaaattagcagaagagattcgatctgttgttaaatcaaatggcggaagagtgacaatggcggggatggaaaatatgccgttga |
52112474 |
T |
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| Q |
209 |
tgaaaacannnnnnnttgaagcatttagaattgaaccacc |
248 |
Q |
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| T |
52112473 |
tgaaatcagtggtgtatgaagcatttagaattgaaccacc |
52112434 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 6533350 - 6533302
Alignment:
| Q |
22 |
tcataatcttttatttgccacatgttttaattcatttggtgggatgaag |
70 |
Q |
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| T |
6533350 |
tcataatctattattcgcaacatgttttaattcgtttggcgggatgaag |
6533302 |
T |
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