View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_25 (Length: 243)
Name: NF7559_low_25
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 5434870 - 5434630
Alignment:
| Q |
11 |
gaacctgtggaaacaacaggaggctagattcttcaaaagaataagaggtttataaaaagttttattgtatt---catggtttcttttgtttgattcttat |
107 |
Q |
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| T |
5434870 |
gaacctgtggaaacaacaggaggctagattcttcaaaagaataagaggtttggaaaaagttttattgtattattcatggtttcttttgtttgattcttat |
5434771 |
T |
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| Q |
108 |
tttggatatggctcttaagaacacatccttgctagattgtgatcttatgcttaagctgttgtaagctttaatgatat-----gttttctccctggaaaat |
202 |
Q |
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| T |
5434770 |
tttggatatggctcttaagaacacatccttgctagattatgatcttatgcttaagctgttgtaagctttaatgatatgtttagttttctccctggaaaat |
5434671 |
T |
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| Q |
203 |
ttagactatgagctgtcaatggtgttgtggtttttctgcat |
243 |
Q |
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| T |
5434670 |
ttagactatgagctgtcaatggtgttgtggtttttctgcat |
5434630 |
T |
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