View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_26 (Length: 241)
Name: NF7559_low_26
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42232708 - 42232486
Alignment:
| Q |
1 |
cacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttcccctt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
42232708 |
cacactcttcctccaatttctccgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctcttcccgcaatttcctcttcccctt |
42232609 |
T |
|
| Q |
101 |
agcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42232608 |
agcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgtc |
42232509 |
T |
|
| Q |
201 |
atcctcacattcctcggctcctt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42232508 |
atcctcacattcctcggctcctt |
42232486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 42232929 - 42232899
Alignment:
| Q |
41 |
acaattctctttaccatctccatcaccaaca |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42232929 |
acaattctctttaccatctccatcaccaaca |
42232899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28945943 - 28946164
Alignment:
| Q |
1 |
cacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttcccctt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||| |
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|
| T |
28945943 |
cacactcttcctccaatttctccttttcttcagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttcccctt |
28946042 |
T |
|
| Q |
101 |
agcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgtt |
200 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
28946043 |
agcacaacccctcgttttctttttctcaacattctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtc |
28946142 |
T |
|
| Q |
201 |
atcctcacattcctcggctcct |
222 |
Q |
| |
|
||||||||| |||||||||||| |
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|
| T |
28946143 |
atcctcacactcctcggctcct |
28946164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34823306 - 34823527
Alignment:
| Q |
1 |
cacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttcccctt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||| |
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|
| T |
34823306 |
cacactcttcctccaatttctccttttcttcagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttcccctt |
34823405 |
T |
|
| Q |
101 |
agcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgtt |
200 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
34823406 |
agcacaacccctcgttttctttttctcaacattctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtc |
34823505 |
T |
|
| Q |
201 |
atcctcacattcctcggctcct |
222 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
34823506 |
atcctcacactcctcggctcct |
34823527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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