View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7559_low_5 (Length: 520)
Name: NF7559_low_5
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 49302447 - 49302936
Alignment:
| Q |
18 |
gaaagagattcttagtgctattccagagagtaagtataagaagctcaagcaaggagtaagggctgtgaggagacattttactctgaatcagccggctaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49302447 |
gaaagagattcttagtgctattccagagagtaagtataagaagctcaagcaaggggtaagggctgtgaggagacattttactctgaatcagccggctaaa |
49302546 |
T |
|
| Q |
118 |
agatttgatgtttttcacatgattttgcactcaatatggctgagaagattgaatataaaattgattagttaatctatactaagcataatagagtatacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49302547 |
agatttgatgtttttcacatgattttgcactcaatatggctgagaagattgaatataaaactgattagttaatctatactaagcataatagagtatacca |
49302646 |
T |
|
| Q |
218 |
tacactag-atagtgannnnnnnnatttgtaactttggcttccaataggaataggaactcaaatattggcaacaattagtgacagaatcacagaaagggg |
316 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49302647 |
tacactagtatagtgattttttttatttgtaactttggcttccaataggaataggaactcaaatattggtaacaattagtgacagaatcacagaaagggg |
49302746 |
T |
|
| Q |
317 |
gctaaagatccaaagaactaaggcattattcacccttgttcatccagagtaacatgtcattgggaaaactttttctttttgttggtacaatttcatagga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49302747 |
gctaaagatccaaagaactaaggcattattcacccttgttcatccagagtaacatgtcattgggaaaactttttctttttgttggtacaatttcatagga |
49302846 |
T |
|
| Q |
417 |
agttagtctcactgaatattatgcaatagaca--nnnnnnnnnnnctgttaaaaagaaggcaaaattgcaccaa-gacttgtatcttgat |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49302847 |
agttagtctcactgaatattatgcaatagacatttttttttttttctgttaaaaagaaggcaaaattgcaccaaggacttgtatcttgat |
49302936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University