View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_6 (Length: 501)
Name: NF7559_low_6
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 6 - 481
Target Start/End: Original strand, 37454184 - 37454659
Alignment:
| Q |
6 |
gtcgaagaatatgcatctgataacaatttaagtgaaaacaattatgattggcaagacaatattgatgatgagaccaagcaatcaaaaggaaaagcaaata |
105 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37454184 |
gtcgaagaaaatgcatctgataacaagttaagtgaaaacaattatgattggcaagacaatattgatgatgagaccaagcaatcaaaaggaaaagcaaata |
37454283 |
T |
|
| Q |
106 |
tacaaggaggacaagttattgttcctgacaccaatggttcaataagcaaagaaaaggcgctggtggatcttagcaaatccgaagatggatctgacgagga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
37454284 |
tacaaggaggacaagttattgttcctgacaccaatggttcaataagcaaagaaaaggcaccggtggatcttagcaaatccgaagatggatctgacgagga |
37454383 |
T |
|
| Q |
206 |
cattttttctgaagttgagaggatcctgaagggaagtccagagtcctcgccaaaagcaacttgttccacatgcgatgatgttgctgtaagagaagctttg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37454384 |
cattttttctgaagttgagaggatcctgaagggaagtccagagtcctcgccaaaagcaacttgttccacaagcgatgatgttgctgtaagagaagctttg |
37454483 |
T |
|
| Q |
306 |
cataaccttgaatgtctattggaaaaatcacttgactccattctctgtgacgtagagctacaaaaacaattacacacgtctttggaatgcataaaacaag |
405 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
37454484 |
cataaccttgaatgtctattggaaaaatcacttgagtccattctctgtgatgtagagctacaaaaacagttacgcacgtctttggaatgcataaaacaag |
37454583 |
T |
|
| Q |
406 |
caacccatgaaaaagtttctccaaatgttgtgaagcttgtccagaaaatggcctcctctattgataaccttttcga |
481 |
Q |
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| T |
37454584 |
caacccatgaaaaagtttctccaaatgttgtgaagcttgtccagaaaatggcatcctctattcataaccttttcga |
37454659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 477
Target Start/End: Complemental strand, 6191400 - 6190950
Alignment:
| Q |
21 |
tctgataacaatttaagtgaaaacaattatgattggcaagacaatattgatgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaag |
120 |
Q |
| |
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||||||||||| | |||||||||||| |||||| || |||||||| ||||||| ||||||||||||| |||||||| |||||||||||||| || | |
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| T |
6191400 |
tctgataacaagtcaagtgaaaacaactatgatgggaaagacaattttgatga---gaccaagcaatcagaaggaaaaccaaatatacaagga---cagg |
6191307 |
T |
|
| Q |
121 |
ttattgttcctgacaccaatggttcaataagcaaagaaaaggcgctggtggatcttagcaaatccgaagatggatctgacgaggacattttttctgaagt |
220 |
Q |
| |
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| T |
6191306 |
ttattgttcccgacaccactgatccaataagtaaagaaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaact |
6191207 |
T |
|
| Q |
221 |
tgagaggatcctgaagggaagtccagagtcctcgccaaaagcaacttgttccacatgcgatgatgttgctgtaagagaagctttgcataaccttgaatgt |
320 |
Q |
| |
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| T |
6191206 |
tgagagcatcctgctgggaagtccagagtctccgccaaaagtaacctgttccacaagtgatgatgttgctgtaaaagaagctttgcacaaccttgaatgc |
6191107 |
T |
|
| Q |
321 |
ctattggaaaaatcacttgactccattctctgtgacgtagagctacaaaaacaattacacacgtctttggaatgcataaaacaagcaacccatgaaaaag |
420 |
Q |
| |
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||||| ||||| ||||| || |||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
6191106 |
ctatttgaaaattcactagagtccattctctatgacgtagagctacaacaacaattacacacgtcattggaatgcataaaactagcaaccaatgaaaaag |
6191007 |
T |
|
| Q |
421 |
tttctccaaatgttgtgaagcttgtccagaaaatggcctcctctattgataaccttt |
477 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| | |||| |||| | ||||||| |
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| T |
6191006 |
tttctccaaacgttgtgaagcttgtccagaaaatgacatcctttattcagaaccttt |
6190950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 171 - 482
Target Start/End: Complemental strand, 6184245 - 6183937
Alignment:
| Q |
171 |
gatcttagcaaatccgaagatggatctgacgaggacattttttctgaagttgagaggatcctgaagggaagtccagagtcctcgccaaaagcaacttgtt |
270 |
Q |
| |
|
|||||||||||| ||||||||||| || || ||| |||| ||||| |||| || |||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
6184245 |
gatcttagcaaacatgaagatggatcagatgatgacccttttgctgaacttgatagcatcctgttgggaagtccagagtcctcgccaaaagcaacctgtt |
6184146 |
T |
|
| Q |
271 |
ccacatgcgatgatgttgctgtaagagaagctttgcataaccttgaatgtctattggaaaaatcacttgactccattctctgtgacgtagagctacaaaa |
370 |
Q |
| |
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||||| |||||| |||||||||||||||| ||||||||||||||| | ||||| |||| |||||||| ||||||||| |||| || |||||||| | |
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| T |
6184145 |
ccacaagcgatg---ttgctgtaagagaagccttgcataaccttgaaagcctattaaaaaattcacttgagtccattctcagtgatgtcgagctacagca |
6184049 |
T |
|
| Q |
371 |
acaattacacacgtctttggaatgcataaaacaagcaacccatgaaaaagtttctccaaatgttgtgaagcttgtccagaaaatggcctcctctattgat |
470 |
Q |
| |
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|||||||| | |||||| |||| ||||||||||||| | |||||||| |||||||| |||||||||| |||||||||||||||| | |||||| |||| |
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| T |
6184048 |
gcaattacatatgtcttttgaatacataaaacaagcatctcatgaaaacgtttctcctaatgttgtgacgcttgtccagaaaatgacatcctctgttgag |
6183949 |
T |
|
| Q |
471 |
aaccttttcgaa |
482 |
Q |
| |
|
|||||||||||| |
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| T |
6183948 |
aaccttttcgaa |
6183937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 6184410 - 6184293
Alignment:
| Q |
21 |
tctgataacaatttaagtgaaaacaattatgattggcaagacaatattgatgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaag |
120 |
Q |
| |
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||||||||||| | ||||| |||||| || ||| ||| ||||||| || ||||||||||||| | || ||| |||| |||| |||||||||| |||| |
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| T |
6184410 |
tctgataacaagtcaagtgtaaacaactacgataggccagacaat--tg-tgatgagaccaagaatccagaagaaaaaccaaacatacaaggagaacaaa |
6184314 |
T |
|
| Q |
121 |
ttattgttcctgacaccaatg |
141 |
Q |
| |
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| ||||||||||| ||||||| |
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| T |
6184313 |
tcattgttcctgaaaccaatg |
6184293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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