View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_8 (Length: 440)
Name: NF7559_low_8
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_8 |
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| [»] scaffold0649 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 20980125 - 20980532
Alignment:
| Q |
18 |
gaggtcagtgtcaaaaatagtcggctgttttaccaatacttttatggaccggtatgactatttcagattttcatttggttgcgataatacaaccggaaaa |
117 |
Q |
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|||||||||||| ||||||||||||||| ||| |||| | |||||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
20980125 |
gaggtcagtgtcgaaaatagtcggctgtgttagcaatgcgtttatggaccagcatgactatttcagattttcatttggctacgataatacaaccggaaaa |
20980224 |
T |
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| Q |
118 |
tataaggtggtggcattcagttctgtagaagtcagagttttcactctgggtgataaattttggagaattattcaaagattccctctgcttccttttcgat |
217 |
Q |
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||||||||||||||||||||||| || || || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20980225 |
tataaggtggtggcattcagttccgtcgaggtgagagttttcactcttggtgataaattttggagaattattcaaagattccctctgcttccttttcgat |
20980324 |
T |
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| Q |
218 |
gtac---tacaaatacaaatgaatgggatcaaaatggtggtgtctatttgtgtaatagtcttaattggtttgccattcgcagcaataacgttggttataa |
314 |
Q |
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|||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20980325 |
gtactcgtacgaatacaaatgaatgggatcgaaatggtggtgtctatttgtgtaatagtcttaattggtttgccattcgcagcaataacgttggttataa |
20980424 |
T |
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| Q |
315 |
tgaatggaaggatcttaatgttaccgttgagcaatttgtgatcatttcccttgatttggctacagagacctacacacaattgcttcctcctcggggtttc |
414 |
Q |
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| T |
20980425 |
tgaatggaaggatcttaatcttagtattgagcaatttgtgattacctctcttgatttggggacagactcgtacacacagttgctgcctcctcggggattc |
20980524 |
T |
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| Q |
415 |
aatgaagt |
422 |
Q |
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| T |
20980525 |
gatgaagt |
20980532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 20967302 - 20967491
Alignment:
| Q |
18 |
gaggtcagtgtcaaaaatagtcggctgttttaccaatacttttatggaccggtatgactatttcagattttcatttggttgcgataatacaaccggaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20967302 |
gaggtcagtgtcaaaaatagtcggctgttttaccaatacttttatggaccggtatgactatttcagattttcatttggttgcgataatacaaccggaaaa |
20967401 |
T |
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| Q |
118 |
tataaggtggtggcattcagttctgtagaagtcagagttttcactctgggtgataaattttggagaattattcaaagattccctctgctt |
207 |
Q |
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| T |
20967402 |
tataaggtggtggcattcagttctgtagaagtcagagttttcactctgggtgataaattttggagaattattcaaagattccctctgctt |
20967491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 287 - 428
Target Start/End: Original strand, 20967493 - 20967634
Alignment:
| Q |
287 |
ccattcgcagcaataacgttggttataatgaatggaaggatcttaatgttaccgttgagcaatttgtgatcatttcccttgatttggctacagagaccta |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20967493 |
ccattcgcagcaataacgttggttataatgaatggaaggatcttaatgttactgttgagcaatttgtgatcatttcccttgatttggggacagagaccta |
20967592 |
T |
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| Q |
387 |
cacacaattgcttcctcctcggggtttcaatgaagtgccaca |
428 |
Q |
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| T |
20967593 |
cacacaattgcttcctcctcggggtttcaatgaagtgccaca |
20967634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 427
Target Start/End: Complemental strand, 20699663 - 20699577
Alignment:
| Q |
341 |
ttgagcaatttgtgatcatttcccttgatttggctacagagacctacacacaattgcttcctcctcggggtttcaatgaagtgccac |
427 |
Q |
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| T |
20699663 |
ttgatcaatttgtgattatctcacttgatttgggaacagagacttacacgcaaatgctccctcctcgagattttgatgaagtgccac |
20699577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 341 - 425
Target Start/End: Original strand, 27618338 - 27618422
Alignment:
| Q |
341 |
ttgagcaatttgtgatcatttcccttgatttggctacagagacctacacacaattgcttcctcctcggggtttcaatgaagtgcc |
425 |
Q |
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| T |
27618338 |
ttgatcaatttgtgattatttcgcttgatttgagtactgagacacacacacagttgcttcctcctcggggtttcaatgaagtgcc |
27618422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 426
Target Start/End: Complemental strand, 16839610 - 16839519
Alignment:
| Q |
335 |
ttaccgttgagcaatttgtgatcatttcccttgatttggctacagagacctacacacaattgcttcctcctcggggtttcaatgaagtgcca |
426 |
Q |
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| T |
16839610 |
ttactgttgagcaatttgtgattatttcacttgatttgggcacggagacatacaaatatttgcttccccctcgaggttttgttgaagtgcca |
16839519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 426
Target Start/End: Complemental strand, 16846693 - 16846602
Alignment:
| Q |
335 |
ttaccgttgagcaatttgtgatcatttcccttgatttggctacagagacctacacacaattgcttcctcctcggggtttcaatgaagtgcca |
426 |
Q |
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|||| ||||||||||||||||| ||||| |||||||||| || ||||| |||| | | |||||||| ||||| ||||| |||||||||| |
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| T |
16846693 |
ttactgttgagcaatttgtgattatttctcttgatttgggcacggagacatacaaatatttgcttccccctcgaggttttgttgaagtgcca |
16846602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 5181 - 5226
Alignment:
| Q |
240 |
ggatcaaaatggtggtgtctatttgtgtaatagtcttaattggttt |
285 |
Q |
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| T |
5181 |
ggatcagaatggtggtgtctattttagtaacagtcttaattggttt |
5226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 5013 - 5069
Alignment:
| Q |
75 |
ctatttcagattttcatttggttgcgataatacaaccggaaaatataaggtggtggc |
131 |
Q |
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|||||| | |||||| ||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
5013 |
ctatttaaaattttcgtttggttatgataacacaaccggaaaatataaggttgtggc |
5069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 20770500 - 20770544
Alignment:
| Q |
344 |
agcaatttgtgatcatttcccttgatttggctacagagacctaca |
388 |
Q |
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| T |
20770500 |
agcaatttgtgatcatctcccttgatttggcgaaagagacataca |
20770544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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