View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_low_9 (Length: 414)
Name: NF7559_low_9
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 84 - 408
Target Start/End: Complemental strand, 42474219 - 42473895
Alignment:
| Q |
84 |
agttagaacggaacggtgggagtatctcatnnnnnnntgagagtgtaatagcaaatgatatgaatataagttaatgtgaataaaataagggtttgattat |
183 |
Q |
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| T |
42474219 |
agttagaacggaacggtgggagtatctcataaaaaaatgagagtgtaatagcaaatgatatgaatataagttaatgtgaataaaataagggtttgattat |
42474120 |
T |
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| Q |
184 |
aagtttatgtagaagaaaaattgaagtatggtggtcagcaaatcataattggctaattaactttcaaagtatgattgctaatgactcaagaacatggtca |
283 |
Q |
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| T |
42474119 |
aagtttatgtagaagaaaaattgaagtatggtggtcagcaaatcataattggctaattaactttcaaagtatgattgctaatgactcaagaacatggtca |
42474020 |
T |
|
| Q |
284 |
atttgattagattaaaaaagaaaagaacatgttcaatttataaagaaattgttctgacttctctttgtgcattgaacacggaaccaacagagagtttgtt |
383 |
Q |
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| T |
42474019 |
atttgattagattaaaaaagaaaagaacatgttcaatttataaagaaattgttctgacttctctttgtgcattgaacacggaaccaacagagagtttgtt |
42473920 |
T |
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| Q |
384 |
gccactgaatcgggttctctgctac |
408 |
Q |
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| T |
42473919 |
gccactgaatcgggttctctgctac |
42473895 |
T |
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