View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7560_high_7 (Length: 206)
Name: NF7560_high_7
Description: NF7560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7560_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 25968312 - 25968481
Alignment:
| Q |
20 |
atatggtcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatcaccagtgccaatt-cccccggcctccaag |
118 |
Q |
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| T |
25968312 |
atatggtcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatcaccagcgccaattccccccggtctcaaag |
25968411 |
T |
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| Q |
119 |
catacaacacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagat |
188 |
Q |
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| T |
25968412 |
catacaacacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagat |
25968481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 25990387 - 25990540
Alignment:
| Q |
26 |
tcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatcaccagtgccaattcccccggcctccaagcatacaa |
125 |
Q |
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||||||||| ||| |||||||||| ||||||||||| | ||||||||||||||||||| |||||||| |||| ||||| ||| |||||||||||||| |
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| T |
25990387 |
tcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctcagactcacgatcaccagcgccatttccctcggtctccaagcatacaa |
25990486 |
T |
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| Q |
126 |
cacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaa |
179 |
Q |
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| T |
25990487 |
cacgctgcctcaaatcactcaattccctttccatgagaaaaattctttccttaa |
25990540 |
T |
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