View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7560_low_1 (Length: 483)
Name: NF7560_low_1
Description: NF7560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7560_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 107 - 467
Target Start/End: Original strand, 37779232 - 37779595
Alignment:
| Q |
107 |
gaagaaaaacagagttttccagcttcgtctcttccttaatcagaatcgtcgttatcatctaattatgaggacaactggttgagcagccacagacaagatc |
206 |
Q |
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| T |
37779232 |
gaagaaaaacagagttttccagcttcgtctcttccttgatcagaatcgtcgttatcatctaattatgaggacaactggttgagcagccacagacaagatc |
37779331 |
T |
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| Q |
207 |
caaaattcattcattctattactattgaggaggttaggagagaacatctc--tggttaggagtttctgactcttgaaatgtgatcccttcattgtagagc |
304 |
Q |
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| T |
37779332 |
caaaattcattcattctattactattgagtaggttaggagagaacatctctctggttaggagtttctgactcttgaaatgtgatcccttcattgtagagc |
37779431 |
T |
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| Q |
305 |
ttctatgctcattatttccattcaataatatacatatttcatcaatctgtttgtgatttctattaatgaccttagaggaagctctttacttgaaggataa |
404 |
Q |
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| T |
37779432 |
ttctatgctcattatttccattcaataatatacatatttcatcaatctgtttgtgatttctattaatgaccttagaggaagctctttacttgaaggataa |
37779531 |
T |
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| Q |
405 |
gggaatcaaatcaacaagaacaaaacctgaaatccatggccttaata-cgtgcaccaaattcac |
467 |
Q |
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| T |
37779532 |
gggaatcaaatcaacaagaacaaaacctgaagtccatggccttaatatcgtgcaccaaattcac |
37779595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 37779176 - 37779231
Alignment:
| Q |
23 |
ctctgaatatcttcctcatcttttttactaaagccactagcagcaagttccgtatc |
78 |
Q |
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| T |
37779176 |
ctctgaatatcttcctcatcttttttactaaagccactagcagcaagttccgtatc |
37779231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 38385795 - 38385933
Alignment:
| Q |
26 |
tgaatatcttcctcatcttttttactaaagccactagcagcaagttccgtatctagaaaaccagcgctaatgtctatcgaagaagaaaaacagagttttc |
125 |
Q |
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| T |
38385795 |
tgaatatcttcctcatcttttttaccaaagccactagcagcaagttccttatctagaaaaccagcactgctgtctat---tgaagaaaaacagagttttc |
38385891 |
T |
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| Q |
126 |
cagcttcgtctcttccttaatcagaatcgtcgttatcatcta |
167 |
Q |
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| T |
38385892 |
cagcttcctctctcccttcattagaattgtcgttatcatcta |
38385933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 3382211 - 3382150
Alignment:
| Q |
295 |
attgtagagcttctatgctcattatttccattcaataatatacatatttcatcaatctgttt |
356 |
Q |
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| T |
3382211 |
attgtagagcttctatgctcatcatttacattgaataatacacatatttcatcattctgttt |
3382150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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