View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7560_low_2 (Length: 397)

Name: NF7560_low_2
Description: NF7560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7560_low_2
NF7560_low_2
[»] chr3 (2 HSPs)
chr3 (303-391)||(874295-874383)
chr3 (242-291)||(877230-877279)
[»] chr5 (2 HSPs)
chr5 (133-163)||(34889725-34889755)
chr5 (133-165)||(31261237-31261269)
[»] chr7 (1 HSPs)
chr7 (130-165)||(25622134-25622170)
[»] chr6 (1 HSPs)
chr6 (122-165)||(19376056-19376100)
[»] chr2 (1 HSPs)
chr2 (133-165)||(30728945-30728977)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 874383 - 874295
Alignment:
Q  303 cattgtttgtgtcaatcatgtaagaattacctttgctgaaccaaattcacaacacagtcaataacaatgtcacgtaaactcttatcgtc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  874383 cattgtttgtgtcaatcatgtaagaattacctttgctgaaccaaattcacaacacagtcaataacaatgtcacgtaaactcttatcgtc 874295  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 877279 - 877230
Alignment:
Q  242 ggggtttgaactcaaatttacaacatttctatcaagtgagttatgagttg 291  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  877279 ggggtttaaactcaaatttacaacatttctatcaagtgagttatgagttg 877230  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 163
Target Start/End: Complemental strand, 34889755 - 34889725
Alignment:
Q  133 ggttaatggtgctttaccctgtaatataggt 163  Q
    |||||||||||||||||||||||||||||||    
T  34889755 ggttaatggtgctttaccctgtaatataggt 34889725  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 31261269 - 31261237
Alignment:
Q  133 ggttaatggtgctttaccctgtaatataggtca 165  Q
    |||||||||||||||| ||||||||||||||||    
T  31261269 ggttaatggtgctttatcctgtaatataggtca 31261237  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 25622134 - 25622170
Alignment:
Q  130 aaaggttaatggtgcttta-ccctgtaatataggtca 165  Q
    ||||||||||||||||||| |||||||||||||||||    
T  25622134 aaaggttaatggtgctttacccctgtaatataggtca 25622170  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 19376056 - 19376100
Alignment:
Q  122 attatttgaaaggttaatggtgcttta-ccctgtaatataggtca 165  Q
    |||| ||||| |||||||||||||||| |||||||||||||||||    
T  19376056 attaattgaagggttaatggtgctttacccctgtaatataggtca 19376100  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 30728977 - 30728945
Alignment:
Q  133 ggttaatggtgctttaccctgtaatataggtca 165  Q
    |||||||||||||||||||||||||||| ||||    
T  30728977 ggttaatggtgctttaccctgtaatataagtca 30728945  T

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