View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7560_low_3 (Length: 385)
Name: NF7560_low_3
Description: NF7560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7560_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 129 - 372
Target Start/End: Original strand, 25968613 - 25968856
Alignment:
| Q |
129 |
tcattgttcaagtcattgttttcaccggcttggtcggagttttctttttccttccggagacggattaggcctttcatggtgccatatgcatccagtcccc |
228 |
Q |
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| T |
25968613 |
tcatttttcaagtcattgttttcaccagcttggtcggagttttctttttccttccggagacggattaggcctttcatggtgccatatgcatccagtcccc |
25968712 |
T |
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| Q |
229 |
acttttccttcgctgtctccacgatcacctcagttgatggatatagtgtcggagttgttagaatcatcggcgtcatcgcacaaggtgagactagggaagc |
328 |
Q |
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| T |
25968713 |
acttttccttggctgtctccacgatcacctcagttgtaggatatagtgtcggagttgttagaatcgtcggcgtcatcgcacaaggtgagaccagggaagc |
25968812 |
T |
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| Q |
329 |
tatcccgccagacttcttcgcacggattatgaacgatgtcgtgt |
372 |
Q |
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| T |
25968813 |
tatcccgccagacttcttcgcacggattatgaacgatgtcgtgt |
25968856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 25968461 - 25968599
Alignment:
| Q |
1 |
ttctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgttgatcaaccctattctccaaattatgtttatcaccacaacttgt |
100 |
Q |
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| T |
25968461 |
ttctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgttcatcaaccctattctccaaattatgtttatcaccacaacttgt |
25968560 |
T |
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| Q |
101 |
tggatatatcatctcaaacctacttaaatcattgttcaa |
139 |
Q |
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| T |
25968561 |
tggatatatcatctcaaacctacttaaatcattgttcaa |
25968599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 25990529 - 25990664
Alignment:
| Q |
1 |
ttctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgttgatcaaccctattctccaaattatgtttatcaccacaacttgt |
100 |
Q |
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| T |
25990529 |
ttctttccttaaaggatagattctgttcttcaagatgtgtgatttgcaaatcttgctcatcaactctattctctaaactatgttcatcacctgaac---t |
25990625 |
T |
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| Q |
101 |
tggatatatcatctcaaacctacttaaatcattgttcaa |
139 |
Q |
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| T |
25990626 |
tggatatatcatctcaaacctgctcaaatcattgttcaa |
25990664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 372
Target Start/End: Original strand, 25990728 - 25990915
Alignment:
| Q |
185 |
gagacggattaggcctttcatggtgccatatgcatccagtccccacttttccttcgctgtctccacgatcacctcagttgatggatatagtgtcggagtt |
284 |
Q |
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|||||||||||| |||||||| ||||||||| | || | ||||||||||||||| || ||||||| | |||||| || || || |||| | ||| ||| |
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| T |
25990728 |
gagacggattagacctttcattgtgccatatccgtcaactccccacttttcctttgccatctccacaaccacctccgtcgacggcgatagcgacggcgtt |
25990827 |
T |
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| Q |
285 |
gttagaatcatcggcgtcatcgcacaaggtgagactagggaagctatcccgccagacttcttcgcacggattatgaacgatgtcgtgt |
372 |
Q |
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| T |
25990828 |
gttaagatcgccggcgtcagcgcacagggtgacaccaaggaagctatgccacctgtcttcttcgcgcggattaagaacgaagtcgtgt |
25990915 |
T |
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