View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7560_low_6 (Length: 228)
Name: NF7560_low_6
Description: NF7560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7560_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25702618 - 25702839
Alignment:
| Q |
1 |
cagcgactagacataggactgcgagtttgtgtccctttaaaacgccaccgtgagtgaggttattcttctgttgacgctcccaaaagttaaccaatccatc |
100 |
Q |
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| T |
25702618 |
cagcggctagacataggactgcgagtttgtgtccctttaaaacgccaccgtgagtgaggttattcttctgttgatgctcccaaaagttaaccaatccatc |
25702717 |
T |
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| Q |
101 |
agaagaaccgcaataaataatcgttgatgaatcgttaaccgtcaaagccgtcacagcgttttcttgtttcaacaaaatcctctccaaaacatgcttcgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25702718 |
agaagaaccgcaataaataatcgttgatgaatcgttaaccgtcaaagccgtcacagcgttttcttgtttcaacaaaatcctctccaaaacatgcttcgtt |
25702817 |
T |
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| Q |
201 |
ttcttaccttttccgtcggtgt |
222 |
Q |
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||||| |||||||||||||||| |
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| T |
25702818 |
ttcttcccttttccgtcggtgt |
25702839 |
T |
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Back To:
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 6485581 - 6485620
Alignment:
| Q |
78 |
tcccaaaagttaaccaatccatcagaagaaccgcaataaa |
117 |
Q |
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| T |
6485581 |
tcccaaaagttaaccaatccatcagaagcaccacaataaa |
6485620 |
T |
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