View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7561_high_1 (Length: 721)
Name: NF7561_high_1
Description: NF7561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7561_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 31171547 - 31171330
Alignment:
| Q |
22 |
gtcaatatgagatattgggtttattcgatattcagtgttgtcttgacattggacattgaattgcatccatattctcgcatgttcatacatactatgaatg |
121 |
Q |
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| T |
31171547 |
gtcaatatgagatattgggtttattcgatattcagtgttgtcttgtcgttggacattgaattgcatccatattctcgcatgttcatacatactatgaatg |
31171448 |
T |
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| Q |
122 |
gtgttggaatcaaaaggattgccttgtgacggtgatttagaggtgttttttgcagtgttgatttcagggggctgtgattatctctgttctttacatgctt |
221 |
Q |
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| T |
31171447 |
gtgttggaatcaaaaggattgccttgtgacggtgatttagaggtgttttttgcagtgttgatttcagggggctgtggttatctctgttctttacatgctt |
31171348 |
T |
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| Q |
222 |
ggttgtccacttgtcatg |
239 |
Q |
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| T |
31171347 |
ggttgtccacgtgtcatg |
31171330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 305 - 651
Target Start/End: Complemental strand, 31171324 - 31170948
Alignment:
| Q |
305 |
ttttcctactgggttctgtttttgttttagcttcattttggctcttgtaggtggtttgttagtttggggtcgggtttgtttcgatggcgtg--------- |
395 |
Q |
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| T |
31171324 |
ttttcctactgggttctgttttggttttagcttcattttggttcttgtaggtggtttgttagtttggggtcgggtttgtttcggtggcgtggttcttatt |
31171225 |
T |
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| Q |
396 |
------ttcgccttttggcgct--------gtgttacttttattgtgagcttggtgaatctttcacatatgcagcgtttaataacatttgccgtttnnnn |
481 |
Q |
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| T |
31171224 |
tgggtgttcgccttttggcgctacatctttgtgttccttttattatgagtttggtgaatctttcacatatgtaacgtttaataacatttgccgtttaaaa |
31171125 |
T |
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| Q |
482 |
nnnnnn-------ctttatgtcatattctcatgaaaatgttctattattactctttagcatgaaaatgaaatcgaagaagtaatgtataagtaacattct |
574 |
Q |
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| T |
31171124 |
taaaaaaaaaaagctttatgtcatatttttatgagaatgttttattattactctttagcatgaaaatgaaattgaagaagtaatgtgtaagtaacattct |
31171025 |
T |
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| Q |
575 |
tgggattaaaaattaagagataattttttacatgaatctagacaacgacaacgtatttatatgattttcgaatttta |
651 |
Q |
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| T |
31171024 |
tgggattaaaaattaagagataattttttacatgaatctagacaatgacaacgtatttatatgattttcgaatttta |
31170948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 656 - 704
Target Start/End: Complemental strand, 31170094 - 31170046
Alignment:
| Q |
656 |
aaattttctctatttttgggtggttgtattctctcatcgagactgatgt |
704 |
Q |
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| T |
31170094 |
aaattttctctatttttgggtggttgtattctctcatcgagaccgatgt |
31170046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 43570159 - 43570194
Alignment:
| Q |
115 |
atgaatggtgttggaatcaaaaggattgccttgtga |
150 |
Q |
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| T |
43570159 |
atgaatggtgttggaatccaaaggattgccttgtga |
43570194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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