View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7561_high_2 (Length: 594)
Name: NF7561_high_2
Description: NF7561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7561_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 249 - 586
Target Start/End: Original strand, 20372532 - 20372869
Alignment:
| Q |
249 |
ttcttcacttatttataagtgttccaaaaggttaaatggtttactacaatgtctatcatctaatttctcaaacaatcaacatttttcttgaaactaaata |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20372532 |
ttcttcacttatttataagtgttccaaaaggttaaatggtttattataatgtctatcatctaatttctcaatcaatcaacatttttcttgaaactaaata |
20372631 |
T |
|
| Q |
349 |
agacgattttaattaattttcgtctctattgatattaaaaatgtgggtacaaaaaagaggaagatgaagaatgatatgttgcaagttttaatgatgtttt |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
20372632 |
agacgattttaattaattttcgtctctattgatattaaaaaagtgggtacaaaaaagaggaagatgaagaatgatgtgttgcaaattttaatgatgtttt |
20372731 |
T |
|
| Q |
449 |
cttgaaatttaggtacaatatcatgtgatgacttgttgttttctagttttaatgcttcctgattgacttcaattagtttcataatctttctaattcaaat |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
20372732 |
cttgaaatttaggtacaatatcatgtgatgacttgttgttttctagttttaatgtttcctgattgacttgaattagtttcataatatttctaattcaaat |
20372831 |
T |
|
| Q |
549 |
gaaaatggtttttgctcataaaattgtacttaacacca |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20372832 |
gaaaatggtttttgctcataaaattgtacttaacacca |
20372869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 16310995 - 16311037
Alignment:
| Q |
81 |
ggttcaggcttctcctggctcttatttgaatttctagctttat |
123 |
Q |
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|||||| ||||||||||||| ||||||||||||||||| |||| |
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| T |
16310995 |
ggttcaagcttctcctggcttttatttgaatttctagccttat |
16311037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 18487779 - 18487821
Alignment:
| Q |
81 |
ggttcaggcttctcctggctcttatttgaatttctagctttat |
123 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| |||| |
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| T |
18487779 |
ggttcaagcttctcctggcttttatttgaatttctagccttat |
18487821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 18491989 - 18492031
Alignment:
| Q |
81 |
ggttcaggcttctcctggctcttatttgaatttctagctttat |
123 |
Q |
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|||||| ||||||||||||| ||||||||||||||||| |||| |
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| T |
18491989 |
ggttcaagcttctcctggcttttatttgaatttctagccttat |
18492031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 8056880 - 8056927
Alignment:
| Q |
77 |
atgcggttcaggcttctcctggctcttatttgaatttctagctttatc |
124 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
8056880 |
atgcggttcaggcttctcctggcttttatttgattttctagctttatc |
8056927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 17137293 - 17137340
Alignment:
| Q |
77 |
atgcggttcaggcttctcctggctcttatttgaatttctagctttatc |
124 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
17137293 |
atgcggttcaggcttctcctggcttttatttgattttctagctttatc |
17137340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 443683 - 443729
Alignment:
| Q |
77 |
atgcggttcaggcttctcctggctcttatttgaatttctagctttat |
123 |
Q |
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||||||||||||||||||||| || |||||||||||| ||||||||| |
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| T |
443683 |
atgcggttcaggcttctcctgtcttttatttgaatttatagctttat |
443729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 6936364 - 6936317
Alignment:
| Q |
77 |
atgcggttcaggcttctcctggctcttatttgaatttctagctttatc |
124 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |||||||||||||| |
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|
| T |
6936364 |
atgcggttcaggcttctcctgacttttatttgattttctagctttatc |
6936317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 11562508 - 11562461
Alignment:
| Q |
77 |
atgcggttcaggcttctcctggctcttatttgaatttctagctttatc |
124 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||| |
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| T |
11562508 |
atgcggttcaggcttctcctgacttttatttgaatttctagcgttatc |
11562461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 18626271 - 18626225
Alignment:
| Q |
77 |
atgcggttcaggcttctcctggctcttatttgaatttctagctttat |
123 |
Q |
| |
|
||||||||||||||||||| | || |||||| ||||||||||||||| |
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| T |
18626271 |
atgcggttcaggcttctccggacttttatttaaatttctagctttat |
18626225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 23059252 - 23059290
Alignment:
| Q |
86 |
aggcttctcctggctcttatttgaatttctagctttatc |
124 |
Q |
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|||||||||||| || ||||||||||||||||||||||| |
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| T |
23059252 |
aggcttctcctgacttttatttgaatttctagctttatc |
23059290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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