View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7561_high_3 (Length: 572)
Name: NF7561_high_3
Description: NF7561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7561_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 10 - 555
Target Start/End: Complemental strand, 42271235 - 42270690
Alignment:
| Q |
10 |
gaagaatattatttactcacactgnnnnnnnccatagtatactttaaccctatatacctaacttaaaacacccttaaacttcacaaaatttctaacctaa |
109 |
Q |
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| T |
42271235 |
gaagaatattatttactcacactgaaaaaaaccatcgtatactttaaccctatatacctaacttaaaacacccttaaacttcacaaaatttctaacctaa |
42271136 |
T |
|
| Q |
110 |
aactgtaaaagatttgtctcttatatagcaataaaatttcttgccagtttcaataatatatagtaataaaaacatcagatatttattaataattaggaaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
42271135 |
aactgtaaaagatttgtctcttatatagcaataaaattttttgccagtttcaataatatatagcagtaaaaacatcagatatttattaataattaggaaa |
42271036 |
T |
|
| Q |
210 |
ttgtttactgtcatgaaggggttccattaagaagtgtcacaaaataatatcattggacagatccatgttttcagccaatagcatatgaannnnnnnncct |
309 |
Q |
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| T |
42271035 |
ttgtttactgtcatgaaggggttccattaagaagtgtcacaaaataatatcattggacagatccatgttttcagtcaatagcatatgaattttttttcct |
42270936 |
T |
|
| Q |
310 |
gtgttctgaaattctaacgcacattatttcgtgatattgagactagttttcatcataacatatagcacaattgtaataattaacaatatacgaaacttac |
409 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42270935 |
ttgtactgaaattctaacgcacattatttcgtgatattgagactagttttcattataacatatagcacaattgtaataattaacaatttacgaaacttac |
42270836 |
T |
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| Q |
410 |
gataaaacatgactccatagttggttatccgaagcatgttcggccatgaagtcgttggaggaaggtggtgcatgcggctcgacgaatactcttcgagagg |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270835 |
gataaaacatgactccatagttggttatccgaagcatgttcggccatgaagtcgttggaggaaggtggtgcatgcggctcgacgaatactcttcgagagg |
42270736 |
T |
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| Q |
510 |
attcaacagtgaggcttgaatggtttgatgcattggtgaaagatgt |
555 |
Q |
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| T |
42270735 |
attcaacagtgaggcttgaatggtttgatgcattggtgaaagatgt |
42270690 |
T |
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