View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7561_low_1 (Length: 787)
Name: NF7561_low_1
Description: NF7561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7561_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 639
Target Start/End: Original strand, 10289516 - 10290155
Alignment:
| Q |
19 |
attccaggaaccaaagtataaaccagaagcaacaagtaaatcttttatgtaagattctgctggatc------------------atttagttgcaccaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
10289516 |
attccaggaaccaaagtataaaccagaagcaacaagtaaatctcttatgtaagattctgctggatagtgaattccagcaggttgattgagttgcaccaat |
10289615 |
T |
|
| Q |
101 |
tcggactcggaaggtttctgttttatagtgaattctttaacttcaacagaatcaagttgattgagttgtctccttagctctgtcaaatcaacaagcaatg |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10289616 |
tcggactcagaaggtttctgttttatagtgaattcctcaacttcaacagaatcaagttgattgagttgtctccttagctctgtcaaatcaacaagcaatg |
10289715 |
T |
|
| Q |
201 |
agatctctatcagaaagagttcgaaaaaatattcacactgcattgaaaa-aatattattggtcgatataattgcgtgtgaagtaaaaacataataaaaca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10289716 |
agatctctatcagaaagagttcgaaaaaatattcacactgcattgaaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaaca |
10289815 |
T |
|
| Q |
300 |
acattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10289816 |
acattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctt |
10289915 |
T |
|
| Q |
400 |
tgaaaactttgtggcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaaca |
499 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10289916 |
tgaaaactttgtggcacaacagtattgtttcttgctgacagatcaggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcatgaaca |
10290015 |
T |
|
| Q |
500 |
ctgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtat |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290016 |
ctgctgcacacatatgcaggactaggaggtacctcggtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtat |
10290115 |
T |
|
| Q |
600 |
gaaatataaaggtcatcatggtcaacaggcaaaaatagta |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290116 |
gaaatataaaggtcatcatggtcaacaggcaaaaatagta |
10290155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 627
Target Start/End: Complemental strand, 9747965 - 9747370
Alignment:
| Q |
19 |
attccaggaaccaaagtataaaccagaagcaacaagtaaatcttttatgtaagattctgctggatcatttagttgcaccaattcggactcggaaggtttc |
118 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
9747965 |
attccaagagccaaagtataaaccagaagcaacaagtaaatctcttatgtaagattctgctggatcatttatttgcaccaattcagactcggacggtttc |
9747866 |
T |
|
| Q |
119 |
tgttttatagtgaattctttaacttcaacagaatcaagttgattgagttgtctccttagctctgtcaaatcaacaagcaatgagatctctatcagaaaga |
218 |
Q |
| |
|
|| || ||||||| || | || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |
|
|
| T |
9747865 |
tggttcgtagtgaagtcctcgacatcactagaatcaagttgattgagttgtctccttagctctgccaaatcaacaagcaaataaatct--atcagaaaga |
9747768 |
T |
|
| Q |
219 |
gttcgaaaaaatattcacactgcattgaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttttct |
318 |
Q |
| |
|
|| ||||| |||||||| ||||||||| |||||| ||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| || |
|
|
| T |
9747767 |
gtctgaaaagatattcacg-----ttgaaaaaagattatttgtcgataaaattgcacatgaagtaagaacataataaaacaacattaaccggctttt-ct |
9747674 |
T |
|
| Q |
319 |
tgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaa |
418 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||| |||||||| |||||||| |
|
|
| T |
9747673 |
taaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattctatcgtaccatttagaccagagctgatgtctcggaaaactt-gtggcacag |
9747575 |
T |
|
| Q |
419 |
cagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacatatgcag |
518 |
Q |
| |
|
||||||| | ||||| |||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
9747574 |
cagtatcatctcttgaggacaaatcaggagtt-gatattggacttaaatattcggttcgcctccaaaagtcttcatggacactgctgcacacagatgcag |
9747476 |
T |
|
| Q |
519 |
gactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcat |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
9747475 |
gactaggaggtacctcagtgtagttctcctaaagagcatatagcagaaaatcaaatgattttttatacaa---ctctgaatgaaatataaaggtcgtcat |
9747379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 636
Target Start/End: Original strand, 10297693 - 10298270
Alignment:
| Q |
19 |
attccaggaaccaaagtataaaccagaagcaacaagtaaatcttttatgtaagattctgctggatcatttagttgcaccaattcggactcggaaggtttc |
118 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||| |
|
|
| T |
10297693 |
attccaagaaccaaagaataaaccagaagcaacaagtaaatctcttatgtaagattctgctggatcatttcgttacaccaattcagactcagaaggtttt |
10297792 |
T |
|
| Q |
119 |
tgttttatagtgaattctttaacttcaacagaatcaagttgattgagttgtctccttagctctgtcaaatcaacaagcaatgagatctctatcagaaaga |
218 |
Q |
| |
|
||||| ||||||||||| | ||| | | |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| || | |||||||| |
|
|
| T |
10297793 |
tgtttcatagtgaattcctcaacataatcagaatcaagttgattgagttgtctccttagcactgtcaaatcaacaagcaaagtgat-tc-accagaaaga |
10297890 |
T |
|
| Q |
219 |
gttcgaaaaaatattcacactgcattg-aaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttttc |
317 |
Q |
| |
|
||||||||||| |||| |||||| |||||| |||||| | |||||||||| | ||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
10297891 |
gttcgaaaaaaagttca----gcattgaaaaaaagattattcaccaatataattgcacgggaagtaaaagcataataaaacaacattaaccgccttttt- |
10297985 |
T |
|
| Q |
318 |
ttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcaca |
417 |
Q |
| |
|
||| |||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
10297986 |
ttgtatcaaaactatggtatga--------------atacttaagaattttattgtaccatttaaaccagagctgatgtctctgaaaac-ttgtggcaca |
10298070 |
T |
|
| Q |
418 |
acagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacatatgca |
517 |
Q |
| |
|
|||||||||| ||||| |||| | |||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
10298071 |
acagtatcgtctcttgatgac--------------aaattggatttaaacattcgattcgcctccagaagtcttcatgaacactgctgcacac--atgct |
10298154 |
T |
|
| Q |
518 |
ggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| || ||| |||||| ||||||||||| |
|
|
| T |
10298155 |
ggactaggaggtacctcagtgtagttctccaaaagagcatatagcagaaaatcaaatgattttttatacaa---ctttgttcgaaataaaaaggtcatca |
10298251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 646 - 772
Target Start/End: Original strand, 10290210 - 10290336
Alignment:
| Q |
646 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290210 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
10290309 |
T |
|
| Q |
746 |
taagaactgttggaccattttgatgtc |
772 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
10290310 |
taagaactgttggagcattttgatgtc |
10290336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 705 - 772
Target Start/End: Original strand, 10298669 - 10298736
Alignment:
| Q |
705 |
ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtc |
772 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298669 |
ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtc |
10298736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 646 - 762
Target Start/End: Complemental strand, 9747171 - 9747055
Alignment:
| Q |
646 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
745 |
Q |
| |
|
||||| ||||||||||||||| ||||||| || || |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9747171 |
aataagtatgaacgaattcttctgcagaaatgagggttgaaaaggaatgagtaatggagggagtatgatgaacttacatgtctctcaccaccgtcgttca |
9747072 |
T |
|
| Q |
746 |
taagaactgttggacca |
762 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
9747071 |
caaggactgttggacca |
9747055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 646 - 704
Target Start/End: Original strand, 10298467 - 10298525
Alignment:
| Q |
646 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggag |
704 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10298467 |
aataaatatgaaagaattcttctgcagaagcgacacttaaaaaggaatgaggattggag |
10298525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 315 - 627
Target Start/End: Original strand, 34694209 - 34694519
Alignment:
| Q |
315 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc |
414 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
34694209 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaac--ttgtggc |
34694306 |
T |
|
| Q |
415 |
acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- |
511 |
Q |
| |
|
||| ||||||| | || | |||| ||| |||||| ||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
34694307 |
acagcagtatcatctcgag--gacaaatcaggagtt-gatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat |
34694403 |
T |
|
| Q |
512 |
-tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaag |
610 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||| |
|
|
| T |
34694404 |
gcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaag |
34694502 |
T |
|
| Q |
611 |
gtcatcatggtcaacag |
627 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34694503 |
gtcatcatggtcaacag |
34694519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 315 - 627
Target Start/End: Original strand, 34716621 - 34716931
Alignment:
| Q |
315 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc |
414 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
34716621 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaac--ttgtggc |
34716718 |
T |
|
| Q |
415 |
acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- |
511 |
Q |
| |
|
||| ||||||| | || | |||| ||| |||||| ||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
34716719 |
acagcagtatcatctcgag--gacaaatcaggagtt-gatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat |
34716815 |
T |
|
| Q |
512 |
-tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaag |
610 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||| |
|
|
| T |
34716816 |
gcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaag |
34716914 |
T |
|
| Q |
611 |
gtcatcatggtcaacag |
627 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34716915 |
gtcatcatggtcaacag |
34716931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 5e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 313 - 627
Target Start/End: Complemental strand, 37744192 - 37743885
Alignment:
| Q |
313 |
ttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtg |
412 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||| |||| ||||| |
|
|
| T |
37744192 |
ttttcttaaatcaaaactaaagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagttgatttctcggaaac--ttgtg |
37744095 |
T |
|
| Q |
413 |
gcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacat |
512 |
Q |
| |
|
||||||||||||| | || | ||| ||| |||||| |||||| || |||||||||| || ||||| ||||||||||| ||||| ||||||| ||| |
|
|
| T |
37744094 |
gcacaacagtatcatctcggg---acaaatcaggagtt-gatatttgaattaaatattcagttggcctctaaaagtcttcatgaacattgctgcatacag |
37743999 |
T |
|
| Q |
513 |
atgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggt |
612 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||||| |
|
|
| T |
37743998 |
atgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggt |
37743900 |
T |
|
| Q |
613 |
catcatggtcaacag |
627 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37743899 |
catcatggtcaacag |
37743885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University