View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7561_low_3 (Length: 594)

Name: NF7561_low_3
Description: NF7561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7561_low_3
NF7561_low_3
[»] chr3 (4 HSPs)
chr3 (249-586)||(20372532-20372869)
chr3 (81-123)||(16310995-16311037)
chr3 (81-123)||(18487779-18487821)
chr3 (81-123)||(18491989-18492031)
[»] chr8 (3 HSPs)
chr8 (77-124)||(8056880-8056927)
chr8 (77-124)||(17137293-17137340)
chr8 (77-123)||(443683-443729)
[»] chr7 (1 HSPs)
chr7 (77-124)||(6936317-6936364)
[»] chr1 (1 HSPs)
chr1 (77-124)||(11562461-11562508)
[»] chr5 (1 HSPs)
chr5 (77-123)||(18626225-18626271)
[»] chr2 (1 HSPs)
chr2 (86-124)||(23059252-23059290)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 249 - 586
Target Start/End: Original strand, 20372532 - 20372869
Alignment:
Q  249 ttcttcacttatttataagtgttccaaaaggttaaatggtttactacaatgtctatcatctaatttctcaaacaatcaacatttttcttgaaactaaata 348  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20372532 ttcttcacttatttataagtgttccaaaaggttaaatggtttattataatgtctatcatctaatttctcaatcaatcaacatttttcttgaaactaaata 20372631  T
Q  349 agacgattttaattaattttcgtctctattgatattaaaaatgtgggtacaaaaaagaggaagatgaagaatgatatgttgcaagttttaatgatgtttt 448  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  20372632 agacgattttaattaattttcgtctctattgatattaaaaaagtgggtacaaaaaagaggaagatgaagaatgatgtgttgcaaattttaatgatgtttt 20372731  T
Q  449 cttgaaatttaggtacaatatcatgtgatgacttgttgttttctagttttaatgcttcctgattgacttcaattagtttcataatctttctaattcaaat 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  20372732 cttgaaatttaggtacaatatcatgtgatgacttgttgttttctagttttaatgtttcctgattgacttgaattagtttcataatatttctaattcaaat 20372831  T
Q  549 gaaaatggtttttgctcataaaattgtacttaacacca 586  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20372832 gaaaatggtttttgctcataaaattgtacttaacacca 20372869  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 16310995 - 16311037
Alignment:
Q  81 ggttcaggcttctcctggctcttatttgaatttctagctttat 123  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  16310995 ggttcaagcttctcctggcttttatttgaatttctagccttat 16311037  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 18487779 - 18487821
Alignment:
Q  81 ggttcaggcttctcctggctcttatttgaatttctagctttat 123  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  18487779 ggttcaagcttctcctggcttttatttgaatttctagccttat 18487821  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 18491989 - 18492031
Alignment:
Q  81 ggttcaggcttctcctggctcttatttgaatttctagctttat 123  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  18491989 ggttcaagcttctcctggcttttatttgaatttctagccttat 18492031  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 8056880 - 8056927
Alignment:
Q  77 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 124  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  8056880 atgcggttcaggcttctcctggcttttatttgattttctagctttatc 8056927  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 17137293 - 17137340
Alignment:
Q  77 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 124  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  17137293 atgcggttcaggcttctcctggcttttatttgattttctagctttatc 17137340  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 443683 - 443729
Alignment:
Q  77 atgcggttcaggcttctcctggctcttatttgaatttctagctttat 123  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||    
T  443683 atgcggttcaggcttctcctgtcttttatttgaatttatagctttat 443729  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 6936364 - 6936317
Alignment:
Q  77 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 124  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||||    
T  6936364 atgcggttcaggcttctcctgacttttatttgattttctagctttatc 6936317  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 11562508 - 11562461
Alignment:
Q  77 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 124  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||    
T  11562508 atgcggttcaggcttctcctgacttttatttgaatttctagcgttatc 11562461  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 18626271 - 18626225
Alignment:
Q  77 atgcggttcaggcttctcctggctcttatttgaatttctagctttat 123  Q
    ||||||||||||||||||| | || |||||| |||||||||||||||    
T  18626271 atgcggttcaggcttctccggacttttatttaaatttctagctttat 18626225  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 23059252 - 23059290
Alignment:
Q  86 aggcttctcctggctcttatttgaatttctagctttatc 124  Q
    |||||||||||| || |||||||||||||||||||||||    
T  23059252 aggcttctcctgacttttatttgaatttctagctttatc 23059290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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