View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7562_high_2 (Length: 441)
Name: NF7562_high_2
Description: NF7562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7562_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 41034767 - 41034354
Alignment:
| Q |
19 |
atggttggctccgtgaaccttttgttgcttctctgatcagtaaaatgatcatttgtgtctggtcctcctaccatggctcccaaaagaacttgtgggttcg |
118 |
Q |
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| T |
41034767 |
atggttggctccgtgaaccttttgttgctcctctgatcagtaaaatgatcatttgtgtctggtcctcctaccatggctcccaaaagaacttgtgggttcg |
41034668 |
T |
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| Q |
119 |
gatttttcgagttcagccatgtcttaccatcatcgcaattgtagagccgtttatcccaagggatcgacgcacttctatgatgaacttggactggaaactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41034667 |
gatttttcgagttcagccatgtcttaccatcatcacaattgtagagccgtttatcccaagggatcgacgcacttctatgatgaacttggactggaaactt |
41034568 |
T |
|
| Q |
219 |
atcaccatatcccactaaataactcattttcattggattttgtcccaagatgtagttaacctgaaacacaaggaagcaaaaattaagactatttccaatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41034567 |
atcaccatatcccactaaataactcattttcattggattttgtcccaagatgtagttaacctgaaacacaaggaagcaaaaattaagactatttccaatt |
41034468 |
T |
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| Q |
319 |
cctatatgttactatagaaaatggttagaaggttaggaattcacctgagagcttgaaaaatcacgaagcattgaaactgagaatgtatcggtttcacagc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41034467 |
cctatatgttactatagaaaatggttagaaggttaggaattcacctgagagcttgaaaaatcacgaagcattgaaactgagaatgtatcggtttcacagc |
41034368 |
T |
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| Q |
419 |
ttgcaccggatatt |
432 |
Q |
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|||||||||||||| |
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| T |
41034367 |
ttgcaccggatatt |
41034354 |
T |
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