View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7562_high_4 (Length: 354)
Name: NF7562_high_4
Description: NF7562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7562_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 8368990 - 8369219
Alignment:
| Q |
16 |
aatgataatcattttcttgaatcattattgggattgtatgtgcaagttggccgtttattaactcctcaaatagttttctacttggtcttgtttttggaac |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8368990 |
aatgataatcattttcttgaattattattgggattgtgtgtgtaagttggccgttta---actcctcaaatagctttctgcttggtcttgtttttggaac |
8369086 |
T |
|
| Q |
116 |
tatggaaagaaccttagggagttttgggacattgaaagatgatttgattctttctgaagaagaa---gatgatgatgaaattaaagaagaaaatacttgt |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8369087 |
tatggaaagaactttagggagttttgggacattgaaagatgatttgattctttctgaagaagaagatgatgatgatgaaattaaagaagaaaatacttgt |
8369186 |
T |
|
| Q |
213 |
aaggaagccatattatatatatgttagatacttgatc |
249 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
8369187 |
aaggaagccatat----tatatgttagatacttgatc |
8369219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 8400432 - 8400276
Alignment:
| Q |
1 |
tgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtatgtgcaagttggccgtttattaactcctcaaatagttttctacttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
8400432 |
tgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtgtgtttgagttggccgtttaat---tcctcaattagttttctacttgg |
8400336 |
T |
|
| Q |
101 |
tcttgtttttggaactatggaaagaaccttagggagttttgggacattgaaagatgattt |
160 |
Q |
| |
|
|||| | |||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
8400335 |
tcttatatttggagctatggaaagaactttaggaagttttgggacattgaaagatgattt |
8400276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 8422009 - 8421853
Alignment:
| Q |
1 |
tgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtatgtgcaagttggccgtttattaactcctcaaatagttttctacttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |||| || ||||| || || || ||||| |
|
|
| T |
8422009 |
tgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtgtgtatgagttgaccgt---ttaattcttcaaacagcttcctgcttgg |
8421913 |
T |
|
| Q |
101 |
tcttgtttttggaactatggaaagaaccttagggagttttgggacattgaaagatgattt |
160 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||| |
|
|
| T |
8421912 |
tcttgtttttggaactatggaaagagctttagggagttttggaacattgaaagaggattt |
8421853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University