View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7562_low_5 (Length: 286)

Name: NF7562_low_5
Description: NF7562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7562_low_5
NF7562_low_5
[»] chr2 (13 HSPs)
chr2 (1-281)||(8400412-8400692)
chr2 (1-281)||(8421989-8422269)
chr2 (7-281)||(8368718-8368992)
chr2 (68-187)||(8394781-8394900)
chr2 (68-187)||(8395024-8395143)
chr2 (68-187)||(8406429-8406548)
chr2 (68-187)||(8412549-8412668)
chr2 (68-187)||(8434647-8434766)
chr2 (70-187)||(8404487-8404604)
chr2 (108-184)||(8375372-8375448)
chr2 (108-184)||(8439655-8439731)
chr2 (91-132)||(8431629-8431670)
chr2 (99-187)||(8417770-8417858)
[»] chr4 (1 HSPs)
chr4 (69-115)||(55331437-55331483)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 8400412 - 8400692
Alignment:
Q  1 atcattattcacccaagtacaattatccttcttctaaatcaccaaacacaaaaacaaaaaccattactcaactctatgcaattcttgaatctgtatccga 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400412 atcattattcacccaagtacaattctccttcttctaaatcaccaaaaacaaaaacaaaaaccattactcaactctatgcaattcttgaatctgtatccga 8400511  T
Q  101 cagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcaccgccaccgccatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400512 cagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcaccgccaccgccatg 8400611  T
Q  201 gcaggtatatcagccataagcggctccggcgctcctcttttagccctcaaattatcttcggcacttttattctctgcttct 281  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8400612 gcaggtatatcagccataagcggctccggtgctcctcttttagccctcaaattatcttcagcacttttattctcagcttct 8400692  T

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Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 8421989 - 8422269
Alignment:
Q  1 atcattattcacccaagtacaattatccttcttctaaatcaccaaacacaaaaacaaaaaccattactcaactctatgcaattcttgaatctgtatccga 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8421989 atcattattcacccaagtacaattctccttcttctaaatcaccaaaaacaaaaacaaaaaccattactcaactctatgcaattcttgaatctgtatccga 8422088  T
Q  101 cagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcaccgccaccgccatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422089 cagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcaccgccaccgccatg 8422188  T
Q  201 gcaggtatatcagccataagcggctccggcgctcctcttttagccctcaaattatcttcggcacttttattctctgcttct 281  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8422189 gcaggtatatcagccataagcggctccggtgctcctcttttagccctcaaattatcttccgcacttttattctcagcttct 8422269  T

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Target: chr2; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 8368992 - 8368718
Alignment:
Q  7 attcacccaagtacaattatccttcttctaaatcaccaaacacaaaaacaaaaaccattactcaactctatgcaattcttgaatctgtatccgacagaat 106  Q
    |||||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368992 attcacccaagtactattccccttcttctaaatcaccaaaaacaaaaacaaaaaccattactcaactctatgcaattcttgaatctgtatccgacagaat 8368893  T
Q  107 agaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcaccgccaccgccatggcaggt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368892 agaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcaccgccaccgccatggcaggt 8368793  T
Q  207 atatcagccataagcggctccggcgctcctcttttagccctcaaattatcttcggcacttttattctctgcttct 281  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8368792 atatcagccataagcggctccggtgctcctcttttagccctcaaattatcttctgcacttttattctcagcttct 8368718  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 8394781 - 8394900
Alignment:
Q  68 tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc 167  Q
    ||||||||||||| |  | ||| ||||||| |||||||||||||||||||| |||||||||||||||||  | || |||||||  ||||||||||||||     
T  8394781 tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca 8394880  T
Q  168 atcaacatgatcactctcac 187  Q
    || || ||||| ||||||||    
T  8394881 ataaatatgattactctcac 8394900  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 8395024 - 8395143
Alignment:
Q  68 tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc 167  Q
    ||||||||||||| |  | ||| ||||||| |||||||||||||||||||| |||||||||||||||||  | || |||||||  ||||||||||||||     
T  8395024 tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca 8395123  T
Q  168 atcaacatgatcactctcac 187  Q
    || || ||||| ||||||||    
T  8395124 ataaaaatgattactctcac 8395143  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 8406548 - 8406429
Alignment:
Q  68 tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc 167  Q
    ||||||||||||| |  | ||| ||||||| |||||||||||||||||||| |||||||||||||||||  | || |||||||  ||||||||||||||     
T  8406548 tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca 8406449  T
Q  168 atcaacatgatcactctcac 187  Q
    || || ||||| ||||||||    
T  8406448 ataaatatgattactctcac 8406429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 8412668 - 8412549
Alignment:
Q  68 tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc 167  Q
    ||||||||||||| |  | ||| ||||||| |||||||||||||||||||| |||||||||||||||||  | || |||||||  ||||||||||||||     
T  8412668 tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca 8412569  T
Q  168 atcaacatgatcactctcac 187  Q
    || || ||||| ||||||||    
T  8412568 ataaatatgattactctcac 8412549  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 8434766 - 8434647
Alignment:
Q  68 tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc 167  Q
    ||||||||||||| |  | ||| ||||||| |||||||||||||||||||| |||||||||||||||||  | || |||||||  ||||||||||||||     
T  8434766 tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca 8434667  T
Q  168 atcaacatgatcactctcac 187  Q
    || || ||||| ||||||||    
T  8434666 ataaatatgattactctcac 8434647  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 8404604 - 8404487
Alignment:
Q  70 aactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccat 169  Q
    ||||||||||||||   ||  ||||||| |||||||| ||||||||| ||||| | ||  ||||||| || |||||||| || ||| |||||||||||||    
T  8404604 aactctatgcaatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacaacaacgtgacaattggaacacgcttttattaaactccat 8404505  T
Q  170 caacatgatcactctcac 187  Q
    ||||||||| || |||||    
T  8404504 caacatgataacactcac 8404487  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 8375372 - 8375448
Alignment:
Q  108 gaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactct 184  Q
    |||||||||||||||||||||||||| ||  | |||||||| || ||||| || ||||||||||||||||| |||||    
T  8375372 gaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaacatgattactct 8375448  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 8439731 - 8439655
Alignment:
Q  108 gaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactct 184  Q
    |||||||||||||||||||||||||| ||    |||||||| || ||||| || ||||||||||||||||| |||||    
T  8439731 gaaatgcatcaaaacattggcgaacagcgtagcaattggaacactcttctcttgaactccatcaacatgattactct 8439655  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 8431670 - 8431629
Alignment:
Q  91 ctgtatccgacagaatagaaatgcatcaaaacattggcgaac 132  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  8431670 ctgtatcagacagaatagaaatgcatcacaacattggcgaac 8431629  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 8417858 - 8417770
Alignment:
Q  99 gacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac 187  Q
    |||||||| ||||||||||| |||||| | |||| |||  | |||||||| || ||||| || || |||||||||||||| ||||||||    
T  8417858 gacagaattgaaatgcatcacaacatttgtgaactacgtaacaattggaacactcttctcttgaattccatcaacatgattactctcac 8417770  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 55331483 - 55331437
Alignment:
Q  69 caactctatgcaattcttgaatctgtatccgacagaatagaaatgca 115  Q
    ||||||||||||||| | || ||||||||||||||||| ||||||||    
T  55331483 caactctatgcaattttagattctgtatccgacagaatcgaaatgca 55331437  T

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