View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7562_low_7 (Length: 266)

Name: NF7562_low_7
Description: NF7562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7562_low_7
NF7562_low_7
[»] chr3 (12 HSPs)
chr3 (18-133)||(49546431-49546546)
chr3 (174-254)||(49546347-49546426)
chr3 (18-71)||(27792880-27792933)
chr3 (23-71)||(13371130-13371178)
chr3 (18-70)||(13709833-13709885)
chr3 (23-71)||(23793597-23793645)
chr3 (34-72)||(5292528-5292566)
chr3 (18-76)||(39885546-39885604)
chr3 (18-91)||(37273142-37273215)
chr3 (26-70)||(23785271-23785315)
chr3 (18-62)||(44284098-44284142)
chr3 (18-70)||(54180790-54180842)
[»] chr1 (19 HSPs)
chr1 (23-67)||(35590905-35590949)
chr1 (24-70)||(27140492-27140538)
chr1 (18-94)||(4549527-4549604)
chr1 (18-70)||(12564509-12564561)
chr1 (18-70)||(28077079-28077131)
chr1 (18-70)||(35925698-35925750)
chr1 (23-70)||(6279412-6279459)
chr1 (23-70)||(16981946-16981993)
chr1 (23-70)||(32515451-32515498)
chr1 (18-64)||(7472319-7472365)
chr1 (24-70)||(12477297-12477343)
chr1 (24-66)||(23402045-23402087)
chr1 (23-64)||(5047159-5047200)
chr1 (25-70)||(6981507-6981552)
chr1 (35-92)||(30371173-30371230)
chr1 (18-70)||(27963380-27963432)
chr1 (26-70)||(30259496-30259540)
chr1 (18-70)||(47598431-47598483)
chr1 (26-70)||(47885043-47885087)
[»] chr7 (10 HSPs)
chr7 (24-70)||(9423604-9423650)
chr7 (18-70)||(24363611-24363663)
chr7 (24-70)||(28165105-28165151)
chr7 (37-94)||(12234875-12234932)
chr7 (18-91)||(33645950-33646022)
chr7 (25-70)||(33894642-33894687)
chr7 (26-91)||(39360039-39360104)
chr7 (18-70)||(529383-529435)
chr7 (18-70)||(7244688-7244740)
chr7 (18-70)||(42281524-42281576)
[»] scaffold0089 (1 HSPs)
scaffold0089 (23-71)||(33636-33684)
[»] chr6 (9 HSPs)
chr6 (23-71)||(20512653-20512701)
chr6 (18-73)||(28088229-28088284)
chr6 (23-73)||(281855-281905)
chr6 (25-91)||(2460140-2460206)
chr6 (35-73)||(7785751-7785789)
chr6 (18-71)||(1401117-1401170)
chr6 (25-70)||(4420658-4420703)
chr6 (18-71)||(34404097-34404150)
chr6 (25-65)||(24836217-24836257)
[»] chr5 (14 HSPs)
chr5 (22-70)||(19460579-19460627)
chr5 (23-71)||(20028499-20028547)
chr5 (23-71)||(38104866-38104914)
chr5 (18-64)||(40205090-40205136)
chr5 (18-67)||(12242723-12242772)
chr5 (18-67)||(18543210-18543258)
chr5 (42-91)||(18704025-18704074)
chr5 (30-71)||(39607506-39607547)
chr5 (18-70)||(8651363-8651414)
chr5 (18-94)||(10272417-10272493)
chr5 (18-70)||(18906350-18906402)
chr5 (26-70)||(33533549-33533593)
chr5 (18-70)||(37611225-37611277)
chr5 (18-70)||(37787955-37788007)
[»] chr4 (14 HSPs)
chr4 (26-70)||(5131260-5131304)
chr4 (18-70)||(46110211-46110263)
chr4 (18-70)||(53673668-53673720)
chr4 (24-91)||(2592298-2592365)
chr4 (18-69)||(14011242-14011293)
chr4 (18-68)||(18628555-18628605)
chr4 (24-70)||(19429723-19429769)
chr4 (25-91)||(27123341-27123407)
chr4 (18-71)||(35064863-35064916)
chr4 (18-70)||(7694020-7694072)
chr4 (18-58)||(23525630-23525670)
chr4 (18-70)||(23819097-23819149)
chr4 (18-70)||(29263378-29263430)
chr4 (18-70)||(34398695-34398747)
[»] chr2 (5 HSPs)
chr2 (18-70)||(35379026-35379078)
chr2 (18-70)||(43065460-43065512)
chr2 (23-94)||(34652022-34652093)
chr2 (37-70)||(25796210-25796243)
chr2 (26-70)||(16867755-16867799)
[»] chr8 (11 HSPs)
chr8 (18-73)||(4558806-4558861)
chr8 (23-70)||(25869276-25869323)
chr8 (24-63)||(39881769-39881808)
chr8 (23-70)||(42215092-42215139)
chr8 (23-64)||(11795105-11795146)
chr8 (27-64)||(38036128-38036165)
chr8 (18-62)||(6509321-6509365)
chr8 (26-90)||(11183561-11183625)
chr8 (18-70)||(11569467-11569519)
chr8 (18-70)||(28769349-28769401)
chr8 (18-70)||(30277255-30277307)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 49546546 - 49546431
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttctattagttccttccaacaatcatata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  49546546 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaatgttatgagttgtttctattagttcctcccaacaatcatata 49546447  T
Q  118 agtattcgtgtcaatt 133  Q
    ||||||||||||||||    
T  49546446 agtattcgtgtcaatt 49546431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 49546426 - 49546347
Alignment:
Q  174 ctagctcaattttttctagctccaaaagggaagaaggaagttttggcagaagtgttaaaaacaaccatttattttcatatt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49546426 ctagctcaattttttctagctccaaaagggaagaaggaagttttggcagaagtgttaaaaa-aaccatttattttcatatt 49546347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 27792880 - 27792933
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    |||| ||||| |||||||| ||||||||| |||||| |||||||||||||||||    
T  27792880 gttttcataaactatcatgtagagcttatagaaataagctgaaaacaacttata 27792933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 13371130 - 13371178
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    |||||||||| ||| ||||||||| |||||| |||||||||||||||||    
T  13371130 cataagctattatgaagagcttatggaaataagctgaaaacaacttata 13371178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13709885 - 13709833
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| ||||||| |||||||||||  |||||||||||||||    
T  13709885 gttttcataagctatcctggagagtttattgaaataaactgaaaacaacttat 13709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 23793597 - 23793645
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    ||||||||||| |||| ||||||| |||||| |||||||||||||||||    
T  23793597 cataagctatcttggaaagcttatagaaataagctgaaaacaacttata 23793645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 5292566 - 5292528
Alignment:
Q  34 atggagagcttattgaaatatgctgaaaacaacttatag 72  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  5292566 atggagagcttatggaaataagctgaaaacaacttatag 5292528  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 39885546 - 39885604
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaat 76  Q
    |||| ||||||||||| | | |||| |||||||||| |||||||| |||||||||||||    
T  39885546 gttttcataagctatcctagggagcatattgaaataagctgaaaataacttatagaaat 39885604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 37273142 - 37273215
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttc 91  Q
    |||| ||||||||||| |||||| ||||| |||||| | |||||||||||||| || || | || |||||||||    
T  37273142 gttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttc 37273215  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 23785271 - 23785315
Alignment:
Q  26 aagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||| ||||||||||||||| |||| | ||||||||||||||||    
T  23785271 aagctctcatggagagcttatggaaacaagctgaaaacaacttat 23785315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 44284142 - 44284098
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaa 62  Q
    |||| ||||||||||| |||||||||||| |||||| ||||||||    
T  44284142 gttttcataagctatcctggagagcttatagaaataagctgaaaa 44284098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 54180842 - 54180790
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| |||||||||| |||||||||||||  ||||| ||| ||||||||||||    
T  54180842 gttttcataagctattatggagagcttatataaataagctaaaaacaacttat 54180790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 35590949 - 35590905
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaact 67  Q
    |||||||||||||||||||||||| |||||| |||||||||||||    
T  35590949 cataagctatcatggagagcttatggaaataagctgaaaacaact 35590905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 27140492 - 27140538
Alignment:
Q  24 ataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||    
T  27140492 ataagctatcatggagagcttatgcaaataagctgaaaacaacttat 27140538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 4549604 - 4549527
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaac-ttatagaaattttatgagttgtttctat 94  Q
    |||| ||||||| ||| |||||||||||||||||| || |||||||||| ||||||| || | || ||||||||||||    
T  4549604 gttttcataagcaatcctggagagcttattgaaatttgttgaaaacaactttatagacatgtcataagttgtttctat 4549527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 12564561 - 12564509
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| |||||| ||||| |||||| ||||||||||||||||    
T  12564561 gttttcataagctatcttggagaacttatggaaataagctgaaaacaacttat 12564509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 28077131 - 28077079
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||  | ||||||||||||||||| ||||||||||||||||    
T  28077131 gttttcataagctattttagagagcttattgaaataagctgaaaacaacttat 28077079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 35925698 - 35925750
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||||||||||||||||||||||| |||| |||||| | |||||||| |||||    
T  35925698 gtttccataagctatcatggagagtttatggaaataagttgaaaacagcttat 35925750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 6279412 - 6279459
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||||| | |||||||||| |||||| ||||||||||||||||    
T  6279412 cataagctatcctagagagcttatggaaatacgctgaaaacaacttat 6279459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 16981993 - 16981946
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||||||||||||||||||  ||||| ||| ||||||||||||    
T  16981993 cataagctatcatggagagcttatataaataagctaaaaacaacttat 16981946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 32515498 - 32515451
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||||||||||||||||||||||| || ||| | ||||||||||||||    
T  32515498 cataagctatcatggagagcttatagatataagttgaaaacaacttat 32515451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 7472319 - 7472365
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaaca 64  Q
    |||||||||||||||| ||||||||||||  ||||| ||||||||||    
T  7472319 gtttccataagctatcttggagagcttatgaaaataagctgaaaaca 7472365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 12477343 - 12477297
Alignment:
Q  24 ataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||||||||||||  ||| |||||| ||||||||||||||||    
T  12477343 ataagctatcatggagagtgtatggaaataagctgaaaacaacttat 12477297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 23402045 - 23402087
Alignment:
Q  24 ataagctatcatggagagcttattgaaatatgctgaaaacaac 66  Q
    |||||||||||| |||||||||| |||||| ||||||||||||    
T  23402045 ataagctatcatcgagagcttatggaaataagctgaaaacaac 23402087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 5047159 - 5047200
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaaca 64  Q
    |||||||||||||| ||||||||| |||||| ||||||||||    
T  5047159 cataagctatcatgaagagcttatggaaataagctgaaaaca 5047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 6981507 - 6981552
Alignment:
Q  25 taagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||  ||||||| |||| |||||||||||||||||||||||    
T  6981507 taagctattctggagagtttatggaaatatgctgaaaacaacttat 6981552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 30371173 - 30371230
Alignment:
Q  35 tggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttct 92  Q
    |||||||| |||||||||| |||||||||||||||| || || | || ||||||||||    
T  30371173 tggagagcgtattgaaataagctgaaaacaacttatggacatgtcattagttgtttct 30371230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 27963432 - 27963380
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| |||||||||| |||||||||||||  ||||| ||| ||||||||||||    
T  27963432 gttttcataagctattatggagagcttatataaataagctaaaaacaacttat 27963380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 30259540 - 30259496
Alignment:
Q  26 aagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||||||||||||||| |||||| | ||||||||| ||||    
T  30259540 aagctatcatggagagcttatggaaataagttgaaaacaatttat 30259496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 47598483 - 47598431
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| |||||||||||| | || | ||||||||||||||||    
T  47598483 gttttcataagctatcctggagagcttatggcaacaagctgaaaacaacttat 47598431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 47885087 - 47885043
Alignment:
Q  26 aagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||||||||| |||| ||||| |||||| ||||||||||||||||    
T  47885087 aagctatcatagagaacttatggaaataagctgaaaacaacttat 47885043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 9423650 - 9423604
Alignment:
Q  24 ataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||    
T  9423650 ataagctatcctggagagcttcttgaaataagctgaaaacaacttat 9423604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 24363663 - 24363611
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| ||||||| |||| |||||| ||||||||||||||||    
T  24363663 gttttcataagctatcctggagaggttatggaaataagctgaaaacaacttat 24363611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 28165105 - 28165151
Alignment:
Q  24 ataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||||||||||||||||| |||||| | |||||||| |||||    
T  28165105 ataagctatcatggagagcttatggaaataagttgaaaacagcttat 28165151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 12234932 - 12234875
Alignment:
Q  37 gagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttctat 94  Q
    |||||||||| |||||| |||||||||| |||||||| || | || ||||||||||||    
T  12234932 gagagcttatggaaataagctgaaaacagcttatagacatgtcataagttgtttctat 12234875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 33646022 - 33645950
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttc 91  Q
    |||| ||||||||||| |||||||||||| ||||||  || ||||||||||||||| || | || |||||||||    
T  33646022 gttttcataagctatc-tggagagcttatggaaataacctaaaaacaacttatagacatgtcataagttgtttc 33645950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 33894642 - 33894687
Alignment:
Q  25 taagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||| |||| || ||||||||||| ||||||||||||||||    
T  33894642 taagctatcctggaaagtttattgaaataagctgaaaacaacttat 33894687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 39360039 - 39360104
Alignment:
Q  26 aagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttc 91  Q
    |||||||| ||| ||||||||||||||| ||||||| |||||||| || || | || |||||||||    
T  39360039 aagctatcctggcgagcttattgaaataagctgaaagcaacttatggatatgtcataagttgtttc 39360104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 529383 - 529435
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| ||||||||||||  ||||||| |||||||| |||||    
T  529383 gttttcataagctatcttggagagcttatgaaaatatgttgaaaacagcttat 529435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 7244688 - 7244740
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||  ||||||||||||  ||||| ||||||||||||||||    
T  7244688 gttttcataagctatattggagagcttatgaaaataagctgaaaacaacttat 7244740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 42281576 - 42281524
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||||  |||||||||| |||||| ||||||||||| ||||    
T  42281576 gttttcataagctatcactgagagcttatagaaataagctgaaaacaaattat 42281524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 33684 - 33636
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    |||||||||| ||| ||||||||| |||||| |||||||||||||||||    
T  33684 cataagctattatgaagagcttatggaaataagctgaaaacaacttata 33636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 20512701 - 20512653
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    |||||||||| ||| ||||||||| |||||| |||||||||||||||||    
T  20512701 cataagctattatgaagagcttatggaaataagctgaaaacaacttata 20512653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 28088284 - 28088229
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttataga 73  Q
    |||| ||||||||||||||||||||| || |||||| ||| |||||||| ||||||    
T  28088284 gttttcataagctatcatggagagctcatggaaataagctcaaaacaacctataga 28088229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 281905 - 281855
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttataga 73  Q
    ||||||||||| | ||||||| || |||||| |||||||||||||||||||    
T  281905 cataagctatcctagagagctcatggaaataagctgaaaacaacttataga 281855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 2460206 - 2460140
Alignment:
Q  25 taagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttc 91  Q
    |||||||| ||||||||||||| |||||| | ||||||||||||| ||| || | || |||||||||    
T  2460206 taagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttc 2460140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 7785789 - 7785751
Alignment:
Q  35 tggagagcttattgaaatatgctgaaaacaacttataga 73  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  7785789 tggagagcttatggaaataagctgaaaacaacttataga 7785751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 1401117 - 1401170
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    |||| |||||||||||||||||||||||| || ||| ||||| ||||| |||||    
T  1401117 gttttcataagctatcatggagagcttatggagataagctgagaacaagttata 1401170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 4420658 - 4420703
Alignment:
Q  25 taagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||| |||||||||||| |||||| |||||||||| |||||    
T  4420658 taagctatcttggagagcttatggaaataagctgaaaacagcttat 4420703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 34404097 - 34404150
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    ||||||| | ||||| ||||||||||||| |||||| | |||||||||||||||    
T  34404097 gtttccagatgctattatggagagcttatagaaataagttgaaaacaacttata 34404150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 24836257 - 24836217
Alignment:
Q  25 taagctatcatggagagcttattgaaatatgctgaaaacaa 65  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  24836257 taagctatcatggagagcttatggaaataagctggaaacaa 24836217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 19460579 - 19460627
Alignment:
Q  22 ccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||||||||||||||||||| |||||  |||||||||| |||||    
T  19460579 ccataagctatcatggagagcttatggaaatgagctgaaaacatcttat 19460627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 20028547 - 20028499
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    |||||||||| ||| ||||||||| |||||| |||||||||||||||||    
T  20028547 cataagctattatgaagagcttatagaaataagctgaaaacaacttata 20028499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 38104914 - 38104866
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    ||||||||||| | |||||||||| |||||| |||||||||||||||||    
T  38104914 cataagctatcttagagagcttatggaaataagctgaaaacaacttata 38104866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 40205136 - 40205090
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaaca 64  Q
    |||| ||||||||||| |||||||||||| |||||| ||||||||||    
T  40205136 gttttcataagctatcctggagagcttatagaaataagctgaaaaca 40205090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 12242772 - 12242723
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaact 67  Q
    |||| ||||||||||| |||||||||||| ||| || |||||||||||||    
T  12242772 gttttcataagctatcttggagagcttatggaagtaagctgaaaacaact 12242723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 18543258 - 18543210
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaact 67  Q
    |||| ||||||||||| ||||||||||| ||||||| |||||||||||||    
T  18543258 gttttcataagctatcctggagagctta-tgaaataagctgaaaacaact 18543210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 18704074 - 18704025
Alignment:
Q  42 cttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttc 91  Q
    ||||| |||||| ||||||||||||||||||| || |||| |||||||||    
T  18704074 cttatggaaataagctgaaaacaacttatagacatgttataagttgtttc 18704025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 39607506 - 39607547
Alignment:
Q  30 tatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    ||||||| ||||||||| |||||| |||||||||||||||||    
T  39607506 tatcatgaagagcttatcgaaataagctgaaaacaacttata 39607547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 8651414 - 8651363
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||  ||| |||||||| |||||||||||||||||||||||    
T  8651414 gttttcataagctattctgg-gagcttatggaaatatgctgaaaacaacttat 8651363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 10272493 - 10272417
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttctat 94  Q
    |||| ||||||| ||| ||||||| ||||  ||||| ||||||||||||||| ||| || | || ||||||||||||    
T  10272493 gttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgtttctat 10272417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 18906350 - 18906402
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| || | ||||||| |||||| ||||||||||||||||    
T  18906350 gttttcataagctatcttgaaaagcttatcgaaataagctgaaaacaacttat 18906402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 33533593 - 33533549
Alignment:
Q  26 aagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||||||| |||||||||||| |||||| | ||||||||||||||    
T  33533593 aagctatcttggagagcttatggaaataagttgaaaacaacttat 33533549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 37611277 - 37611225
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| |||||||||||| ||||||  ||||||||| |||||    
T  37611277 gttttcataagctatcttggagagcttatggaaataacctgaaaacagcttat 37611225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 37788007 - 37787955
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| |||||||||||| ||||||  ||||||||| |||||    
T  37788007 gttttcataagctatcttggagagcttatggaaataacctgaaaacagcttat 37787955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 5131304 - 5131260
Alignment:
Q  26 aagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||    
T  5131304 aagctatcctggagagcttatggaaataagctgaaaacaacttat 5131260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 46110211 - 46110263
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| |||||||||| || |||||||||| |||||| ||||||||||||||||    
T  46110211 gttttcataagctatgattgagagcttatagaaataagctgaaaacaacttat 46110263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 53673720 - 53673668
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| ||||||||||||  ||||| ||||||||||||||||    
T  53673720 gttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttat 53673668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 2592365 - 2592298
Alignment:
Q  24 ataagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttc 91  Q
    |||||||||  |||||||||||| |||||| ||||||||||||||| ||| |  |||| |||||||||    
T  2592365 ataagctattttggagagcttatggaaataagctgaaaacaacttacagacacattataagttgtttc 2592298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 14011242 - 14011293
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaactta 69  Q
    |||| ||||||||||| |||||||||||| |||||| |||||||||| ||||    
T  14011242 gtttacataagctatcttggagagcttatggaaataagctgaaaacagctta 14011293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 18628605 - 18628555
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaactt 68  Q
    |||| |||||| |||| |||||||||||| |||||| ||||||||||||||    
T  18628605 gttttcataagttatcttggagagcttatggaaataagctgaaaacaactt 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 19429723 - 19429769
Alignment:
Q  24 ataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||||||||| |||||||||||| |||||| |||||||||| |||||    
T  19429723 ataagctatcctggagagcttatggaaataagctgaaaacagcttat 19429769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 27123407 - 27123341
Alignment:
Q  25 taagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttc 91  Q
    |||||||| ||||||||||||| |||||| | ||||||||||||| ||| || | || |||||||||    
T  27123407 taagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttc 27123341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 35064863 - 35064916
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttata 71  Q
    |||| |||||| |||||||||||| |||| |||||| ||||||||||| |||||    
T  35064863 gttttcataagatatcatggagagtttatggaaataagctgaaaacaatttata 35064916  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 7694072 - 7694020
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| |||||| |||| ||||||| |||| |||||| ||||||||||||||||    
T  7694072 gttttcataagttatcctggagagtttatggaaataagctgaaaacaacttat 7694020  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 23525670 - 23525630
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctg 58  Q
    |||| ||||||||||||| ||||||| ||||||||||||||    
T  23525670 gttttcataagctatcattgagagctcattgaaatatgctg 23525630  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 23819097 - 23819149
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| || ||||||||| |||||| | ||||||||||||||    
T  23819097 gttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttat 23819149  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 29263378 - 29263430
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| || ||||||| | |||||| ||||||||||||||||    
T  29263378 gttttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttat 29263430  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 34398747 - 34398695
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||| |||||||||||||||| ||| || || |||||||||||||    
T  34398747 gttttcataagccatcatggagagcttatggaagtaagccgaaaacaacttat 34398695  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 35379078 - 35379026
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| ||||||||||||  ||||| ||||||||||||||||    
T  35379078 gttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttat 35379026  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 43065512 - 43065460
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| |||||| |||| ||||||||||||||||||| ||||||||||| ||||    
T  43065512 gttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttat 43065460  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 34652093 - 34652022
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgtttctat 94  Q
    ||||||||||| |||||||||||| |||||| | |||||||| ||||| || || | || ||||||||||||    
T  34652093 cataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctat 34652022  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 25796243 - 25796210
Alignment:
Q  37 gagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||||||||||| ||||||||||||||||    
T  25796243 gagagcttattgaaataagctgaaaacaacttat 25796210  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 16867755 - 16867799
Alignment:
Q  26 aagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||||||| |||||||||||| |||||| | ||||||||||||||    
T  16867755 aagctatcttggagagcttatggaaataagttgaaaacaacttat 16867799  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 4558806 - 4558861
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttataga 73  Q
    |||||||||||||||| | |||||||||| ||||||  || |||||||||||||||    
T  4558806 gtttccataagctatcctagagagcttatggaaataaactaaaaacaacttataga 4558861  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 25869323 - 25869276
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| |||||||||||||| |||| |||||| ||||||||||||||||    
T  25869323 cataggctatcatggagagtttatggaaataagctgaaaacaacttat 25869276  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 39881808 - 39881769
Alignment:
Q  24 ataagctatcatggagagcttattgaaatatgctgaaaac 63  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  39881808 ataagctatcatggagagcttatggaaataagctgaaaac 39881769  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 42215139 - 42215092
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    ||||||||||| ||||||||||||  ||||| ||||||||||||||||    
T  42215139 cataagctatcttggagagcttatgtaaataagctgaaaacaacttat 42215092  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 11795105 - 11795146
Alignment:
Q  23 cataagctatcatggagagcttattgaaatatgctgaaaaca 64  Q
    |||||||||| ||||||||||||| |||||| ||||||||||    
T  11795105 cataagctattatggagagcttatggaaataagctgaaaaca 11795146  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 38036165 - 38036128
Alignment:
Q  27 agctatcatggagagcttattgaaatatgctgaaaaca 64  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  38036165 agctatcttggagagcttattgaaataagctgaaaaca 38036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 6509365 - 6509321
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaa 62  Q
    |||| ||||||||||| ||||||||||||||||||| | ||||||    
T  6509365 gttttcataagctatcctggagagcttattgaaataaggtgaaaa 6509321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 11183561 - 11183625
Alignment:
Q  26 aagctatcatggagagcttattgaaatatgctgaaaacaacttatagaaattttatgagttgttt 90  Q
    |||||| | |||||||||||| |||||| |||||||||| |||||||| || | || ||||||||    
T  11183561 aagctaccctggagagcttatggaaataagctgaaaacagcttatagacatatcataagttgttt 11183625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 11569519 - 11569467
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||||||||||| || |  ||||| ||||||||||||||||    
T  11569519 gttttcataagctatcatggagagattttgaaaataagctgaaaacaacttat 11569467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 28769401 - 28769349
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||  ||||||| |||| |||||| ||||||||||||||||    
T  28769401 gttttcataagctattttggagagtttatggaaataagctgaaaacaacttat 28769349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 30277307 - 30277255
Alignment:
Q  18 gtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 70  Q
    |||| ||||||||||| | ||||| |||| |||||| ||||||||||||||||    
T  30277307 gttttcataagctatcctagagagtttatggaaataagctgaaaacaacttat 30277255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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