View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7563_high_1 (Length: 761)
Name: NF7563_high_1
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_high_1 |
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| [»] scaffold1246 (2 HSPs) |
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Alignment Details
Target: scaffold1246 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: scaffold1246
Description:
Target: scaffold1246; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 290 - 635
Target Start/End: Complemental strand, 366 - 21
Alignment:
| Q |
290 |
tgtagttgatcatattcctaataccattgattctataagcctaaatgaatttggaaaaccaaaggttccacaaatggagaaaactaacaggaatgaaggg |
389 |
Q |
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| T |
366 |
tgtagttgatcatattcctaataccattgattctataagcctaaatgaatttggaaaaccaaaggttccacaaatggagaaaactaacaggaatgaaggg |
267 |
T |
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| Q |
390 |
aagatgaatggaagggaatctaaaaagttgccttttgaagccaatgaagatgttcaaaaaaccaagtttggagatatcatccaaaagggtgtcacaaggg |
489 |
Q |
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| T |
266 |
aagatgaatggatgggaatctaaaaagtttccttttgaagccaatgaagatgtttaaaaaactaagtttggagatatcatccaaaagggtgtcacaaggg |
167 |
T |
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| Q |
490 |
ctaagtttgaaagtcaagatgaagatcaagaatgtgttaaagaaaaacttggtaaggacggatttgatgatgcaaagataactatcaatgaagagtttga |
589 |
Q |
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| T |
166 |
ctaagtttgaaagtcaagatgaagattaagaatgtgttaaagaaaaacttggtaaggacggatttgatgatgcaaagataactatcaatgaagagtttga |
67 |
T |
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| Q |
590 |
taagtacttacctaaaaagagtcatgaggcaagggaaggattgaat |
635 |
Q |
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| T |
66 |
taagtacttacctaaaaagagtcatgaggcaagggaaggattgaat |
21 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1246; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 650 - 432
Alignment:
| Q |
6 |
gtcgaagaatataataaagagacgatacaaaaaggagaggaggacgatggcattaagagggacgtaacggaatgcacaatagaaaaagaaaaagaagaat |
105 |
Q |
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| T |
650 |
gtcgatgaaaataataaagagactatacaaaaaggagtggaggacgatggcattaagagggatgtaacttaatgcttaatagaaaatgaaaaagaagaat |
551 |
T |
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| Q |
106 |
ctaagttgaagattgaggatagtaaggtaaactctacaagagaaatagagaaagatgttggtaaagatatctcacataacattgtagatacaagccaaag |
205 |
Q |
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| T |
550 |
ctaagttgaagattgaggatagtaaggtaaactctacaagagaaatagagaaagatgttggtaaagatatctcacataacattgtagatacaagccaaag |
451 |
T |
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| Q |
206 |
agttgctgaagggtcaatg |
224 |
Q |
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| T |
450 |
agttgttgaagggtcaatg |
432 |
T |
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