View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7563_high_12 (Length: 240)
Name: NF7563_high_12
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 45 - 225
Target Start/End: Original strand, 52445741 - 52445921
Alignment:
| Q |
45 |
gatttaattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtct |
144 |
Q |
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| T |
52445741 |
gatttaattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtct |
52445840 |
T |
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| Q |
145 |
acaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccgtgacacgtatg |
225 |
Q |
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| T |
52445841 |
aaaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccctgacacgtatg |
52445921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 52447657 - 52447786
Alignment:
| Q |
50 |
aattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtctacaag |
149 |
Q |
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| T |
52447657 |
aattaaattcatattaatacacatcttatcctttaattgaatttcaacatgtttaatttcttcatacaaacttttaagcactagcacatttgtctacaag |
52447756 |
T |
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| Q |
150 |
ttttaactaaacatgtaaaaatatcaaaat |
179 |
Q |
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| T |
52447757 |
tttgaactaaacatgtaaaaatatcaaaat |
52447786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 52446722 - 52446848
Alignment:
| Q |
96 |
atatgtttaatttcttcttacaaactattgagtactaacacatttgtctacaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctc |
195 |
Q |
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| T |
52446722 |
atatgtttaatttattcatacaaattattaagcactaacatatctgtctacaagttttaggtaaacatgtaaaaatattgaaatctctaggtcggacctc |
52446821 |
T |
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| Q |
196 |
atgatatgagtttgaaccgtgacacgt |
222 |
Q |
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| T |
52446822 |
atgatatgagtttgaaccttgatacgt |
52446848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 52445409 - 52445451
Alignment:
| Q |
5 |
ttggagccatccaccagcaatggtaaggacctccatcggagat |
47 |
Q |
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| T |
52445409 |
ttggagcaatccaccagcaatggtaaggacctccgtcggagat |
52445451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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