View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7563_high_2 (Length: 588)
Name: NF7563_high_2
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Original strand, 1792559 - 1793119
Alignment:
| Q |
1 |
tcaaaaggttatatgttatgtatttccgtcgcaacatatgcaacaataggtgcaaaactgagtgaatatgaaggaaaaaacctccaaaattgtaactttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
1792559 |
tcaaaaggttatatgttatgtatttccgtcgcaacatatgcaacaataggtgcaaaactgagtgaata-gaagaaaaaaaactccaaaattgtaactttt |
1792657 |
T |
|
| Q |
101 |
gtccacaatccccttgacttcaaagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactc |
200 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1792658 |
gtcaaaaatccccttgacttcaaagaatcttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcagttaaactc |
1792757 |
T |
|
| Q |
201 |
tatgacgtaacagttacatgtacatgtggcaactccacgtagactaaaccttatgccacgtcatttaccccacgt--acacgtggactgaactcttgacc |
298 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||| |||||||||| |||||||||| || | || ||||||||||||||||||||||| |
|
|
| T |
1792758 |
tatgacgtaacagt------tacatgtggcagctccacgtggactgaaccttatgctacgtcatttatcctatgtacacacgtggactgaactcttgacc |
1792851 |
T |
|
| Q |
299 |
taataattgtgttgcatgtgtgactttcattgctgtttgtcacttcatctatgtaccaaaac-aaattcctcccaaatctaatacaatgttctttagagg |
397 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1792852 |
taataattgtgttgcgtgtgtgactttcattgctgtttgtcacttcgtctatgtatcaaaacaaaattcctcccaaatctaatacaatgttctttaga-- |
1792949 |
T |
|
| Q |
398 |
ccagaggggaccaagtgagattttcaaggcattctgcccaaaaggaatgattccatctacatatccttttgttc--nnnnnnngttgttcgatgatcttc |
495 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1792950 |
------gggaccaagcgagattttcaaggcattctgcccaaaaggaatgattccatctacatatccttttgttctttttttttgttgttcgatgatcttc |
1793043 |
T |
|
| Q |
496 |
atatcctttttgttgtttggaggttttcacttggttttatactagtcgttctatttgcattaatatccaactctaa |
571 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1793044 |
atatcctttttgttgtttggagtttttcacttggttttatactagtcgttctatttgcattaatatccaactctaa |
1793119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 45576006 - 45576128
Alignment:
| Q |
141 |
cccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactctatgacgtaacagttacatgtacatgtggcaactccacgt |
240 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| || |||||||| ||| ||||||| || |||| | ||| ||| |||||||||||||| ||||| || |
|
|
| T |
45576006 |
cccataaaattgtcaaacgttagtcaattaccccctccgtttgtttgggctattaaaccctttgacatgacatttatatgtacatgtggcatctccatgt |
45576105 |
T |
|
| Q |
241 |
agactaaaccttatgccacgtca |
263 |
Q |
| |
|
| |||||| |||||||||||| |
|
|
| T |
45576106 |
gggctaaactgtatgccacgtca |
45576128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 22919310 - 22919399
Alignment:
| Q |
174 |
catctgtttgttttggcaattaaactctatgacgtaacagttacatgtacatgtggcaactccacgtagactaaaccttatgccacgtca |
263 |
Q |
| |
|
|||| ||| |||||||| |||||| ||||||| ||||| ||| | ||||||||||| ||||| ||||||| ||| |||||| |||||| |
|
|
| T |
22919310 |
catccgttggttttggctgttaaaccctatgacataacatttaattatacatgtggcacctccatgtagactgaacgttatgctacgtca |
22919399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 263
Target Start/End: Complemental strand, 31633686 - 31633547
Alignment:
| Q |
123 |
aagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactctatgacgtaacagttacatgta |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | || || |||||||| || |||||||| ||| |||||| || |||| | ||| ||| ||||| |
|
|
| T |
31633686 |
aagaaacttcaaaaaccccc-ataaaattgtcaaacattagtccattaccccctccgtttgtttgggctgttaaaccctgtgacatgacaattatatgta |
31633588 |
T |
|
| Q |
223 |
catgtggcaactccacgtagactaaaccttatgccacgtca |
263 |
Q |
| |
|
||||||||| ||||| || | ||||||| ||||||| |||| |
|
|
| T |
31633587 |
catgtggcatctccatgtgggctaaaccgtatgccatgtca |
31633547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 27915108 - 27914987
Alignment:
| Q |
142 |
ccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactctatgacgtaacagttacatgtacatgtggcaactccacgta |
241 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||| | | ||| |||||| ||||||| |||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
27915108 |
ccattaaattgtcaaatgttagtcaattaccccctttatttactttggctgttaaactttatgacgtgttagttaactgtacatgtggcacctccacgtg |
27915009 |
T |
|
| Q |
242 |
gactaaaccttatgccacgtca |
263 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
27915008 |
gactgaaccttatgccacgtca |
27914987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 21012484 - 21012413
Alignment:
| Q |
123 |
aagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaatta |
195 |
Q |
| |
|
|||||||||||||| |||| | | |||||||||| |||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
21012484 |
aagaaacttcaaaa-ccccacttgaaattgtcaaacgttaatcaattaccccctctgtttgttttggctatta |
21012413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 29500069 - 29500137
Alignment:
| Q |
123 |
aagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattacccc-atctgtttgttttggc |
190 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||| |||| ||||||||||| || |||||||||||| |
|
|
| T |
29500069 |
aagaaacttcataaacctctcataaaattgtcaaacgttagtcaattacccctctccgtttgttttggc |
29500137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 45115003 - 45114917
Alignment:
| Q |
87 |
aaattgtaacttttgtccacaatccccttgacttcaaagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattacccc |
174 |
Q |
| |
|
||||||||||||| ||| | || ||||||||||| |||||||||| |||||||| ||| |||||||||| |||| | ||||||||| |
|
|
| T |
45115003 |
aaattgtaactttcgtcaaaaacccccttgacttttaagaaacttc-aaaacccctcatgaaattgtcaaacgttagttaattacccc |
45114917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 50381936 - 50382028
Alignment:
| Q |
147 |
aaattgtcaagcgttgctcaattacccca-tctgtttgttttggcaattaaactctatgacgtaacagttacatgtacatgtggcaactccac |
238 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||||||||| |||||| |||||||| || || |||||||||||||| |||||| |
|
|
| T |
50381936 |
aaattgtcaaacgttagtcaattacccccctctgtttgttttggctgttaaaccatatgacgtggcaaataaatgtacatgtggcacctccac |
50382028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University