View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7563_high_5 (Length: 461)
Name: NF7563_high_5
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Original strand, 41783618 - 41784059
Alignment:
| Q |
16 |
aaaaggaggtgagttgcttaaaggtaatgcggtataataaggcctactttagcacaccccaaggtggactacaccatcggtgatgttcttgctaatattg |
115 |
Q |
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| T |
41783618 |
aaaaggaggtgagttgcttaaaggtaatgcggtataataaggcctactttagcacaccccaaggcggactacaccatcagtgatgttcttgctaatattg |
41783717 |
T |
|
| Q |
116 |
ttgcaactaagaaatcttaacacttatatttgtagtctttgcaattgacagctttttctaactgaattttgaaatgtttgggattttattaatgtaaatg |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41783718 |
ttgcaactaagaaatcgtaacacttatatttgtagtctttgcaattgacagctttttctaactgaattttgaaatgtttgggattttattaatgtaaatg |
41783817 |
T |
|
| Q |
216 |
tatcaaaatttcccattttatgcagatattgaaaccaagatcacaaaaatccagaagcttattaagaacgaaaaccaaagcaaaaaagatgcgagcccta |
315 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41783818 |
tatcataatttcccattttatgcaggcattgaaaccaagatcacaaaaatccagaagcttattaagaacgaaaaccaaagcaaaaaagatgcgagtccta |
41783917 |
T |
|
| Q |
316 |
gacgttctagaaaagatacagaacttatgggattaacggaggacttatacaagcagtaccagtcactcaatgcacaatatgataatctcattgggaaagt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41783918 |
gacgttctagaaaagatacagaacttatgggattaacggaggacttatacaagcagtaccagtcacttaatgcacaatatgataatctcattgggaaagt |
41784017 |
T |
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| Q |
416 |
ggtttctaaccaaagaaaagatttaatgttttcatctcactc |
457 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41784018 |
ggtttctaaccaaagaaaagatttaatgttttcatctgactc |
41784059 |
T |
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