View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7563_high_7 (Length: 424)
Name: NF7563_high_7
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 37117647 - 37118043
Alignment:
| Q |
9 |
agcagagaagatataaccctgttacgtgctgtggcccttctaaataaaactctatacttattaaggtttggttggtctaaataagaagcaaatggtcgta |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37117647 |
agcagagaagatataaccctgttacgtgctgtggcccttctaaataaaactctatacttattaaggtttgggtggtctaaataagaagcaaatggtcgta |
37117746 |
T |
|
| Q |
109 |
gatgacataccatcatgtatgtaaagtataagcaggagtccctcccactccccatggcttttaactaagaccgtatgtacgtcttgtgaaagtataaatt |
208 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37117747 |
gatgacataccatcatatatgtaaagtataagcaggagtccctcccactccccatggcttttaactaagaccgtatgtacgtcttgtgaaagtgtaaatt |
37117846 |
T |
|
| Q |
209 |
tctgcagtagaatgcatattcacaagacgggtgtatcacgattggttggtacaaattacaatacaacataaataaagaactctatcattagaagttacta |
308 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37117847 |
cctgcagtataatgcatattcacaagac-acagtatcacgattggtt-------agtacaatacaacataaataaagaacgctatcattagaagttacta |
37117938 |
T |
|
| Q |
309 |
tcccaatacattttattgcctctcaataatacacg--cgcgcacgtacacactccctcaagtcctaaaaataaaagaaatttgggattagatcatgaact |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37117939 |
tcccaatacattttattgcctctcaataatacacgcccgcgcacgtacacactccctctagtcctaaaaataaaagaaatttgggattagatcatgaact |
37118038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University