View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7563_low_10 (Length: 298)

Name: NF7563_low_10
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7563_low_10
NF7563_low_10
[»] chr4 (1 HSPs)
chr4 (20-298)||(23330901-23331181)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 23331181 - 23330901
Alignment:
Q  20 ttaaaatcatcccttaagaatttataatgtgaatgttagtagtatat--ctaagtatctttgtcatagattcatagactcatagttatataccataatat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23331181 ttaaaatcatcccttaagaatttataatgtgaatgttagtagtatatatctaagtatctttgtcatagattcatagactcatagttatataccataatat 23331082  T
Q  118 attttgacaaaatatatcttgtacatattgtcatagctagaagctagttatcttggaagtcaattaatatacaagtcaaaaacccttaactagctaggtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23331081 attttgacaaaatatatcttgtacatattgtcatagctagaagctagttatcttggaagtcaattaatatacaagtcaaaaacccttaactagctaggtt 23330982  T
Q  218 cactagggttctagcgttgaacaattagaaatctaacttcgtaacgttattatgaattgtaatcatgttattacaagtctt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23330981 cactagggttctagcgttgaacaattagaaatctaacttcgtaacgttattatgaattgtaatcatgttattacaagtctt 23330901  T

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