View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7563_low_11 (Length: 273)
Name: NF7563_low_11
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 6706009 - 6705749
Alignment:
| Q |
13 |
tttcgtgttatcatagttgaaattagaagtattttaaattcaacttacaattttgaagttaagtttattcgaccataaacgaatatagttgttcataata |
112 |
Q |
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| T |
6706009 |
tttcatgttatcatagttgaaattagaagtattttaaattcaacttacaattttgaagttaagtttattcgaccataaacgaatatagttgttcataata |
6705910 |
T |
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| Q |
113 |
ttatgttcctttttgtatgcaacattaattnnnnnnntgagtagctaaactatagtaattttattacccaaatttaaattcaaaagtgttgttacttgct |
212 |
Q |
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| T |
6705909 |
ttatgttcctttttgtatccaacattaattaaaaaaatgagtagctaaactatagtaattttattacccaaatttaacttcaaaagtgttgttacttgct |
6705810 |
T |
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| Q |
213 |
aatagttagagcatagaccctacctcccactttgtctgtagttatcatttcgaagtgatta |
273 |
Q |
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| T |
6705809 |
aatagttagagcatagaccctacctcccactttgtctgtagttataatttcgaagtgatta |
6705749 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 23034679 - 23034747
Alignment:
| Q |
19 |
gttatcatagttgaaattagaagtattttaaattcaacttacaattttgaagttaagtttattcgacca |
87 |
Q |
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| T |
23034679 |
gttatcacagctgagattataagtattttaaattcaaattacacctttgaggataagtttattcaacca |
23034747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 23034757 - 23034844
Alignment:
| Q |
21 |
tatcatagttgaaattagaagtattttaaattcaacttacaattttgaagt--taagtttattcgaccataaacgaatatagttgttc |
106 |
Q |
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| T |
23034757 |
tatcatagctaagattataagtattttaaattcaaattacaactttgaggttgtaagtttattcaaccacaagcgattatggttgttc |
23034844 |
T |
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