View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7563_low_13 (Length: 252)
Name: NF7563_low_13
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 2597986 - 2597770
Alignment:
| Q |
19 |
gtgatagggaagggattgaggatgctatggttgggaagagaaggtttcaatatgaagatgaagtgaggaaaaatctgttgaattatgatttgtggtttga |
118 |
Q |
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| T |
2597986 |
gtgatagggaagggattgaggatgctattgttgggaagagaaggtttcaatatgaagatgaagtgaggaaaaatctgttgaattatgatta-tggtttga |
2597888 |
T |
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| Q |
119 |
ttatataagatggaaagagagtgtcgggaataaggaaagaactatggaggtttatgagagagctatagctgatgttcctctagccgatgagaagcgatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
2597887 |
ttatataagatggaaagagagtgtcgggaataaggaaagaactatggaggtttatgagagagctatagctaatgttcctctagccgatgagaatcgatac |
2597788 |
T |
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| Q |
219 |
tggtagcactatatttat |
236 |
Q |
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||| |||||||||||||| |
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| T |
2597787 |
tggcagcactatatttat |
2597770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 49276550 - 49276430
Alignment:
| Q |
78 |
gaagtgaggaaaaatctgttgaattatgatttgtggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggtttatgaga |
177 |
Q |
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| T |
49276550 |
gaagtgagggaaaatcctttcaactatgattcctggtttgaatatatacgattggaagaaagtgtaggggataaggaaaaaactagggaggtttatgaga |
49276451 |
T |
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| Q |
178 |
gagctatagctgatgttcctc |
198 |
Q |
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|||||||| || ||||||||| |
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| T |
49276450 |
gagctatatctaatgttcctc |
49276430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 49280065 - 49279987
Alignment:
| Q |
120 |
tatataagatggaaagagagtgtcgggaataaggaaagaactatggaggtttatgagagagctatagctgatgttcctc |
198 |
Q |
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|||||| ||| | |||| ||||| ||| || |||||| ||||| |||||||||||||||||||||| || ||||||||| |
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| T |
49280065 |
tatatacgattggaagaaagtgtgggggatgaggaaaaaactagggaggtttatgagagagctatatctaatgttcctc |
49279987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 34788359 - 34788576
Alignment:
| Q |
19 |
gtgatagggaagggattgaggatgctatggttgggaagagaaggtttcaatatgaagatgaagtgaggaaaaatctgttgaattatgatttgtggtttga |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||||||||||||||| |
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| T |
34788359 |
gtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttatgaaaaatccattgaattatgatttgtggtttga |
34788458 |
T |
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| Q |
119 |
ttatataagatggaaagagagtgtcgggaataaggaaagaactatggaggtttatgagagagctatagctgatgttcctctagccgatgagaagcgatac |
218 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| || |||||||||||| |
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| T |
34788459 |
ttatataagattggaagagagtgtcgggaataaggaaagaactagggaggtttatgagagagctatagctaatgtacctctagctgaggagaagcgatac |
34788558 |
T |
|
| Q |
219 |
tggtagcactatatttat |
236 |
Q |
| |
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||| ||| |||||||||| |
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| T |
34788559 |
tggcagcgctatatttat |
34788576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 2292835 - 2292618
Alignment:
| Q |
19 |
gtgatagggaagggattgaggatgctatggttgggaagagaaggtttcaatatgaagatgaagtgaggaaaaatctgttgaattatgatttgtggtttga |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
2292835 |
gtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagtgaggaaaaatccgttgaattatgattcatggtttga |
2292736 |
T |
|
| Q |
119 |
ttatataagatggaaagagagtgtcgggaataaggaaagaactatggaggtttatgagagagctatagctgatgttcctctagccgatgagaagcgatac |
218 |
Q |
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||||||||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || || |||||||||||| |
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| T |
2292735 |
ttatataagattggaagagagtgttgggaataaggaaagaactagggaggtttatgagagagctatagccaatgttcctcctgctgaggagaagcgatac |
2292636 |
T |
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| Q |
219 |
tggtagcactatatttat |
236 |
Q |
| |
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||| ||| |||||||||| |
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| T |
2292635 |
tggcagcgctatatttat |
2292618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 24602074 - 24602246
Alignment:
| Q |
28 |
aagggattgaggatgctatggttgggaagagaaggtttcaatatgaagatgaagtgaggaaaaatctgttgaattatgatttgtggtttgat----tata |
123 |
Q |
| |
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|||||||| | |||||||| |||||||||||||||||||| | ||||||||| ||||| ||||| ||||||||||||| ||||||||| |||| |
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| T |
24602074 |
aagggattaaagatgctattgttgggaagagaaggtttcagtccaaagatgaagcgaggataaatcgcttgaattatgattcttggtttgattatatata |
24602173 |
T |
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| Q |
124 |
taagatggaaagagagtgtcgggaataaggaaagaactatggaggtttatgagagagctatagctgatgttcctc |
198 |
Q |
| |
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||| || | | |||||||| |||||||||||| ||| | ||||||||||||||||||| ||||| ||||||||| |
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| T |
24602174 |
taatattgga--agagtgtcaggaataaggaaacaaccaaggaggtttatgagagagctgtagctaatgttcctc |
24602246 |
T |
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