View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7563_low_14 (Length: 242)
Name: NF7563_low_14
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 43383311 - 43383536
Alignment:
| Q |
20 |
gctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagaggcattaacc |
119 |
Q |
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| T |
43383311 |
gctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagaggcattaacc |
43383410 |
T |
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| Q |
120 |
ctcctcctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaatccaaagaacaa |
219 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43383411 |
ctccacctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttactttctaattcaaatccaaagaacaa |
43383510 |
T |
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| Q |
220 |
gaaagc---agcaaaatcaacaacaa |
242 |
Q |
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|||||| ||||||| ||||||||| |
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| T |
43383511 |
gaaagcaaaagcaaaagcaacaacaa |
43383536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 25870032 - 25870237
Alignment:
| Q |
20 |
gctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagaggcattaacc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25870032 |
gctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagaggcattaacc |
25870131 |
T |
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| Q |
120 |
ctcctcctaatttcagaagacaacaacttg---ttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaatccaaagaa |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25870132 |
ctcctcctaatttcagaagacaacaacaacaacttgtgactccagaagaacaggaaggtgctgcttctttgcttttacttgctaattcaaatccaaagaa |
25870231 |
T |
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| Q |
217 |
caagaa |
222 |
Q |
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|||||| |
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| T |
25870232 |
caagaa |
25870237 |
T |
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