View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7563_low_16 (Length: 226)
Name: NF7563_low_16
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 53088757 - 53088965
Alignment:
| Q |
1 |
tgtttaaaaaatatttattagcctggtccatgcattgatccgccggttcaccaaacctgagttttgactcaaccaattcgaccagcccggtcccggtccg |
100 |
Q |
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| T |
53088757 |
tgtttaaaaaatatttattagcctggtccatgtattgatccgccggttcaccaaacctgagttttgactcaaccaattcgaccagcccggtcccggtccg |
53088856 |
T |
|
| Q |
101 |
gtctagttttttaaacaatgcatggaacatccacaatatgcaagtatccatactctgctactctactagtcgtcaactcacaaagttcaactacatttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53088857 |
gtctagttttttaaacaatgcatggaacatccacaatatgcaagtatccatactctgctactctactagtcgtcaactcacaaagttcaactacatttta |
53088956 |
T |
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| Q |
201 |
cacaatatt |
209 |
Q |
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||||||||| |
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| T |
53088957 |
cacaatatt |
53088965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 14333484 - 14333667
Alignment:
| Q |
18 |
ttagcctggtccatgcattgatccgcc-ggttcaccaaacctgagttttgactcaaccaattcgaccagcccggtcccggtccggtctagttttttaaac |
116 |
Q |
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|||||||||||| ||| |||||||||| ||||||||||||||||| || | ||||||||||||||||| | ||||||| ||||| ||||||| |
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| T |
14333484 |
ttagcctggtccttgctttgatccgcccggttcaccaaacctgaggttcggctcaaccaattcgacca---------cagtccggtttagttctttaaac |
14333574 |
T |
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| Q |
117 |
aatgcatggaacatccacaatatgcaagtatccatactctgctactctactagtcgtcaactcacaaagttcaactacattttacacaatatt |
209 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
14333575 |
aatgcatggaacatccacaatatgcaagtatctatacactgctactctactagtcgtcacttcacaaagttcaactaaattttacacaatatt |
14333667 |
T |
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