View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7563_low_4 (Length: 552)
Name: NF7563_low_4
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7563_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 38125217 - 38124698
Alignment:
| Q |
1 |
acatcagtcaagaatattgaattaattacnnnnnnnnntttggtagatattaatcaaaattaggtttacttcttacttggtaatataatataaaagcttt |
100 |
Q |
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| T |
38125217 |
acatcagtcaagaatattgaattaattacaaaaaaaattttggtagatattaatcaaaattaggtttacttcttacttggtaatataatataaaagcttt |
38125118 |
T |
|
| Q |
101 |
tttcatttcaagcttttctcttgcaaactgtatcttctttttcataacagtatttctggacttggtgagaccatcccagacacatatcaaattgctctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38125117 |
tttcatttcaagcttttctcttgcaaactgtatcttctttttcataacagtatttctggacttggtgagaccatcccagacacatatcaaattgctctaa |
38125018 |
T |
|
| Q |
201 |
aaacattcataaaccaagataatgttaattcaatttctcattagctataaagatcacataaagaaaggagacataatgcatttagaattagcttatttac |
300 |
Q |
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| T |
38125017 |
aaacattcataaaccaagataatgttaattcaatttctcattagctataaaga-----------aaggagacataatgcatttagaattagcttatttac |
38124929 |
T |
|
| Q |
301 |
cacttatcttgtcttatagcataaactttgttttaacaaggttataaaaatagttaatgccatgacatcttagtaacctagtttccgtttatttcaacaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
38124928 |
cacttatcttgtcttatagcataaactttgttttaacaaggttataaaaatagttaatgacatgacatcttagtaacctagtttcagtttatttcaacaa |
38124829 |
T |
|
| Q |
401 |
gtgttccggacaacttatgtaaacaacttacagaaatgcttattcgataaaagttcattaaatatgtgagacaaacaagtgtaccttggtgtggcgagaa |
500 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38124828 |
gtgttccggacaacttatgcaaacaacttacagaaatgcttattcgataaaagttcattaaatatgtgagacaaacaagtgtacctcggtgtggcgagaa |
38124729 |
T |
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| Q |
501 |
atgtttgcattcacaatttgtgctctagcgt |
531 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
38124728 |
atgtttgcattcacaatttgtgctctagcgt |
38124698 |
T |
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