View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7563_low_5 (Length: 509)

Name: NF7563_low_5
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7563_low_5
NF7563_low_5
[»] chr1 (1 HSPs)
chr1 (7-492)||(6705167-6705656)
[»] chr5 (4 HSPs)
chr5 (272-338)||(18914167-18914233)
chr5 (272-338)||(18914374-18914440)
chr5 (272-333)||(11189646-11189707)
chr5 (272-336)||(2716377-2716441)
[»] chr6 (2 HSPs)
chr6 (298-354)||(23591545-23591601)
chr6 (272-338)||(19291924-19291990)
[»] chr7 (1 HSPs)
chr7 (294-345)||(44966214-44966265)
[»] chr3 (1 HSPs)
chr3 (299-338)||(16078896-16078935)
[»] chr8 (4 HSPs)
chr8 (272-338)||(33435915-33435981)
chr8 (297-338)||(15968095-15968136)
chr8 (297-338)||(25186804-25186845)
chr8 (272-345)||(33435704-33435777)
[»] chr2 (2 HSPs)
chr2 (286-354)||(21568864-21568932)
chr2 (294-334)||(29676186-29676226)


Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 492
Target Start/End: Complemental strand, 6705656 - 6705167
Alignment:
Q  7 gcaatgtggtacattaagcacatgaaatccttaaagcacgtgatgaggattgagttagtagatttccacttagcatattaactgcgtagagtagctctag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6705656 gcaatgtggtacattaagcacatgaaatccttaaagcacgtgatgagggttgagttagtagatttccacttagcatattaactgcgtagagtagctctat 6705557  T
Q  107 atcttgtggttaggatgtcaacacctaatatgattctgactgatacaccactccaaatattttgggatttcagcgggcaatactcagcgtatcttaaaat 206  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6705556 atcttgtggttaggatgtcaacacctaatatgattcttactcatacaccactccaaatattttgggatttccgcgggcaatactcagcgtatcttaaaat 6705457  T
Q  207 aattgagtcattttacacctaaaaatgaaagagagataaagaaa------aataatgttaagcgtatttgttaactcatttttgcaaaaccaatttataa 300  Q
    ||||||||||||| | ||||| |||||||||||||| | ||| |      |||||||||||||||||||||||| |||| ||||||||||||| ||||||    
T  6705456 aattgagtcatttcatacctataaatgaaagagagagagagagagagagaaataatgttaagcgtatttgttaagtcatctttgcaaaaccaacttataa 6705357  T
Q  301 ggtgatgaatgtctcctttatataaacttttatcaagaattttattcatctgatacgtgttacttggtttttcccaatatttacaaaatttaactgtgta 400  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||    
T  6705356 ggtgatgaatgtctcttttatataaacttttatcaagagttttattcatctgatacgtgttacttggtttttctcaatatttacaaaatttaac--tgta 6705259  T
Q  401 tattttaataaaaatgatttactttcaattttaaataaaacatggaattttattttaaggtgcagttaatgaatacaaaaagatcacatgaa 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6705258 tattttaataaaaatgatttactttcaattttaaataaaacatggaattttattttaaggtgcagttaatgaatacaaaaagatcacatgaa 6705167  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 18914167 - 18914233
Alignment:
Q  272 taactcatttttgcaaaaccaatttataaggtgatgaatgtctcctttatataaacttttatcaaga 338  Q
    ||||||||| || ||||||||| || |||||||| || |||||||||| ||||||||||| ||||||    
T  18914167 taactcattcttacaaaaccaacttgtaaggtgaggattgtctcctttttataaacttttctcaaga 18914233  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 18914374 - 18914440
Alignment:
Q  272 taactcatttttgcaaaaccaatttataaggtgatgaatgtctcctttatataaacttttatcaaga 338  Q
    ||||||||| || ||||||||  || |||||||| || |||||||||| ||||||||||| ||||||    
T  18914374 taactcattcttacaaaaccagcttgtaaggtgaggattgtctcctttttataaacttttctcaaga 18914440  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 11189707 - 11189646
Alignment:
Q  272 taactcatttttgcaaaaccaatttataaggtgatgaatgtctcctttatataaacttttat 333  Q
    |||||||||||| ||||||||  || ||| |||| || ||||||||||||||||||| ||||    
T  11189707 taactcatttttacaaaaccagcttgtaaagtgaggattgtctcctttatataaactattat 11189646  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 2716441 - 2716377
Alignment:
Q  272 taactcatttttgcaaaaccaatttataaggtgatgaatgtctcctttatataaacttttatcaa 336  Q
    ||||||||  || ||||||||  ||||||||||| || |||||||| | ||||||||||||||||    
T  2716441 taactcatccttacaaaaccagcttataaggtgaggagtgtctcctctttataaacttttatcaa 2716377  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 23591601 - 23591545
Alignment:
Q  298 taaggtgatgaatgtctcctttatataaacttttatcaagaattttattcatctgat 354  Q
    |||||||| || |||||||||||||||||||||| |||||||| ||||  |||||||    
T  23591601 taaggtgaagagtgtctcctttatataaacttttctcaagaatcttatctatctgat 23591545  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 19291924 - 19291990
Alignment:
Q  272 taactcatttttgcaaaaccaatttataaggtgatgaatgtctcctttatataaacttttatcaaga 338  Q
    ||||||||  || ||||||||| ||||||||||| || |||||||| |||| ||||| |||||||||    
T  19291924 taactcatccttacaaaaccaacttataaggtgaggattgtctcctctatacaaactcttatcaaga 19291990  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 44966265 - 44966214
Alignment:
Q  294 tttataaggtgatgaatgtctcctttatataaacttttatcaagaattttat 345  Q
    ||||||||||||||| || ||||||| |||| ||||||||||||||| ||||    
T  44966265 tttataaggtgatgattgactcctttttatatacttttatcaagaatcttat 44966214  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 16078896 - 16078935
Alignment:
Q  299 aaggtgatgaatgtctcctttatataaacttttatcaaga 338  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  16078896 aaggtgatgattgcctcctttatataaacttttatcaaga 16078935  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 33435981 - 33435915
Alignment:
Q  272 taactcatttttgcaaaaccaatttataaggtgatgaatgtctcctttatataaacttttatcaaga 338  Q
    |||||||| ||| |||||||   || |||||||| || ||||||||||||||||||| |||||||||    
T  33435981 taactcatctttacaaaaccggcttgtaaggtgaggattgtctcctttatataaactcttatcaaga 33435915  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 15968095 - 15968136
Alignment:
Q  297 ataaggtgatgaatgtctcctttatataaacttttatcaaga 338  Q
    ||||||||| || ||||||||||||||||||| |||||||||    
T  15968095 ataaggtgaggattgtctcctttatataaactcttatcaaga 15968136  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 25186845 - 25186804
Alignment:
Q  297 ataaggtgatgaatgtctcctttatataaacttttatcaaga 338  Q
    ||||| |||||| |||||||| ||||||||||||||||||||    
T  25186845 ataagatgatgattgtctcctctatataaacttttatcaaga 25186804  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 33435777 - 33435704
Alignment:
Q  272 taactcatttttgcaaaaccaatttataaggtgatgaatgtctcctttatataaacttttatcaagaattttat 345  Q
    ||||||||  || ||||||| | || |||| ||| || ||||||||||||||||||| ||||||||| ||||||    
T  33435777 taactcatccttacaaaaccgacttgtaagatgaggattgtctcctttatataaactcttatcaagagttttat 33435704  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 21568864 - 21568932
Alignment:
Q  286 aaaaccaatttataaggtgatgaatgtctcctttatataaacttttatcaagaattttattcatctgat 354  Q
    |||||| ||||||||||| |  | |||||||||| | |||||||||||||| ||| ||||| |||||||    
T  21568864 aaaaccgatttataaggtaagaagtgtctcctttttctaaacttttatcaaaaatcttatttatctgat 21568932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 29676226 - 29676186
Alignment:
Q  294 tttataaggtgatgaatgtctcctttatataaacttttatc 334  Q
    |||||||||||| || |||||||| ||||||||||||||||    
T  29676226 tttataaggtgaggattgtctcctctatataaacttttatc 29676186  T

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