View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7563_low_7 (Length: 436)

Name: NF7563_low_7
Description: NF7563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7563_low_7
NF7563_low_7
[»] chr7 (2 HSPs)
chr7 (13-420)||(1785876-1786282)
chr7 (18-111)||(24840535-24840630)
[»] chr1 (5 HSPs)
chr1 (196-400)||(8966261-8966465)
chr1 (14-111)||(28660370-28660467)
chr1 (14-101)||(23987957-23988044)
chr1 (14-95)||(13443609-13443690)
chr1 (108-157)||(23987867-23987916)
[»] chr2 (4 HSPs)
chr2 (14-92)||(33054058-33054136)
chr2 (14-111)||(33051917-33052014)
chr2 (14-94)||(31634471-31634551)
chr2 (14-101)||(27955800-27955887)
[»] chr6 (4 HSPs)
chr6 (27-111)||(8048599-8048683)
chr6 (27-108)||(24442701-24442782)
chr6 (14-57)||(14238864-14238907)
chr6 (161-255)||(3537692-3537786)
[»] chr8 (7 HSPs)
chr8 (21-111)||(26375248-26375338)
chr8 (17-111)||(5646692-5646786)
chr8 (22-104)||(18180341-18180423)
chr8 (14-101)||(23570853-23570940)
chr8 (161-232)||(22924997-22925068)
chr8 (14-101)||(42890755-42890842)
chr8 (14-101)||(42891315-42891402)
[»] scaffold0240 (2 HSPs)
scaffold0240 (13-111)||(16385-16483)
scaffold0240 (108-154)||(16308-16354)
[»] chr5 (2 HSPs)
chr5 (161-282)||(28252759-28252884)
chr5 (14-95)||(19496925-19497006)


Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 1786282 - 1785876
Alignment:
Q  13 aatatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattcacgggtatgtta 112  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||    
T  1786282 aatatttcgaattagagattttaaaattgtagtaatcatccttcagtttattgtaatatttgcgctcatagtattccaaatcatatttatgg-tatgtta 1786184  T
Q  113 ttatgaaccctaataaccagaattggtaccccttccctgttcggaggagataatgatattacttatgagggaggagataatgagatgatgtttacatggg 212  Q
    |||  ||| ||||||||| |||||  ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1786183 ttaccaactctaataaccggaatttatactccttcccagttcggaggagataatgatattacttatcagggaggagataatgagatgatgtttacatggg 1786084  T
Q  213 gtacacataagattgctatggcccgtgtttttcactttgataaaagcccaagagaaaataagtctagtttcttggtaataacagaacatgaaaaggaact 312  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1786083 gtacacataagattgctatggctcgtgtttttcactttgataaaagcccaagagaaaataagtctagtttcttggtaataacagaacatgaaaaggaact 1785984  T
Q  313 tgataattctgtttaggaaacttaatgtttatgtctagtggtgagcaaagggctgatgagtgttctgaagaaggaagtttcaattccataacaagtgata 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1785983 tgataattctgtttaggaaacttaatgtttatgtctagtggtgagcaaagggctgatgagtgttctgaagaaggaagtttcaattccataacaagtgata 1785884  T
Q  413 gagaacct 420  Q
    ||||||||    
T  1785883 gagaacct 1785876  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 24840630 - 24840535
Alignment:
Q  18 atcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatag--tattccaaatcatattcacgggtatgtt 111  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||  ||||| |||||| |||||||||||||||    
T  24840630 atcgaattagagattttaaacttgtagtaatcatccttcagttttttgtaatatttacgctcatagtatattctaaatcagattcacgggtatgtt 24840535  T

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Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 196 - 400
Target Start/End: Complemental strand, 8966465 - 8966261
Alignment:
Q  196 gatgatgtttacatggggtacacataagattgctatggcccgtgtttttcactttgataaaagcccaagagaaaataagtctagtttcttggtaataaca 295  Q
    ||||||||||||||| || |||||||||||||||||||| | | |||| ||||||||||| |||| ||||||||| ||| || |||  ||||| || |||    
T  8966465 gatgatgtttacatgtggcacacataagattgctatggctcctattttacactttgataagagcctaagagaaaagaagactggttatttggtgatgaca 8966366  T
Q  296 gaacatgaaaaggaacttgataattctgtttaggaaacttaatgtttatgtctagtggtgagcaaagggctgatgagtgttctgaagaaggaagtttcaa 395  Q
     || |||||||||||||| || || ||  | | |||| | |||| || |||| |||||||||||||||| ||||||||||| ||||| |||| || ||||    
T  8966365 caaaatgaaaaggaacttaatgatgctagtaaagaaattgaatgcttttgtccagtggtgagcaaagggttgatgagtgttgtgaaggaggatgtgtcaa 8966266  T
Q  396 ttcca 400  Q
    |||||    
T  8966265 ttcca 8966261  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 28660370 - 28660467
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattcacgggtatgtt 111  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||| || ||||||||| | |||||||||||||||| |||| |||||| ||||||||    
T  28660370 atatatcaaatcagagattttaaacttgtagtaattatccttcagctttttgtaatatctacgctcatagtattccatatcagattcacaggtatgtt 28660467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 23988044 - 23987957
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattca 101  Q
    ||||||||||| |||||||||||| |||||||||||||||||||  |||||||||||| | | |||||||||||||| |||| |||||    
T  23988044 atatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacactcatagtattccagatcagattca 23987957  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 13443609 - 13443690
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatca 95  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||   ||||||||||| | |||||||| ||||||||||||    
T  13443609 atatatcgaatcagagatttcaaatttgtagtaatcatccgtcaacctgttgtaatatctacgctcataatattccaaatca 13443690  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 23987916 - 23987867
Alignment:
Q  108 tgttattatgaaccctaataaccagaattggtaccccttccctgttcgga 157  Q
    |||||||| |||||||||||||||||||||||   ||||| |||||||||    
T  23987916 tgttattaagaaccctaataaccagaattggtcatccttctctgttcgga 23987867  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 33054058 - 33054136
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaa 92  Q
    |||||||||||||||||||||||| | |||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  33054058 atatatcgaatcagagattttaaactcgtagtaatcatccttcaacttgttgtaatatttacgctcatagtattccaaa 33054136  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 33052014 - 33051917
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattcacgggtatgtt 111  Q
    |||||||||||||||||||||||| |||||||||||| | ||||  |||||||||||| | ||||||||||||||||||||| || ||||| ||||||    
T  33052014 atatatcgaatcagagattttaaacttgtagtaatcaacattcaacttgttgtaatatctacgctcatagtattccaaatcagatccacggatatgtt 33051917  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 31634551 - 31634471
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatc 94  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| |||  |||||||| | ||||||||||||||||||||    
T  31634551 atatatcgaatcagagatttcaaatttgtagtaatcatccttcaattttgtgtaatatctacgctcatagtattccaaatc 31634471  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 27955800 - 27955887
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattca 101  Q
    |||||||||||| ||||||| ||| ||||| |||||||||||||   |  |||||||| | ||||||||||||||||||||| |||||    
T  27955800 atatatcgaatcggagatttcaaatttgtaataatcatccttcaaccttgtgtaatatctacgctcatagtattccaaatcagattca 27955887  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 8048599 - 8048683
Alignment:
Q  27 gagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattcacgggtatgtt 111  Q
    ||||||||||| |||||||||||||||  || ||||||||||||| | ||||||||||||||||||||| |||||| ||||||||    
T  8048599 gagattttaaacttgtagtaatcatccggcaatttgttgtaatatctacgctcatagtattccaaatcagattcacaggtatgtt 8048683  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 24442701 - 24442782
Alignment:
Q  27 gagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattcacgggtat 108  Q
    ||||||||||| |||||||||||||||||||   ||||||||||| | ||||||||||||||||||||| ||||| ||||||    
T  24442701 gagattttaaacttgtagtaatcatccttcaacatgttgtaatatctacgctcatagtattccaaatcagattcatgggtat 24442782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 14238907 - 14238864
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttca 57  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  14238907 atatatcgaatcagagattttaaactagtagtaatcatccttca 14238864  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 3537692 - 3537786
Alignment:
Q  161 gataatgatattacttatgagggaggagataatgagatgatgtttacatggggtacacataagattgctatggcccgtgtttttcactttgataa 255  Q
    ||||||||||||||||||  |||| | ||||||| |||| ||||||| ||||| ||  |||||||||||||| | | |||||| || ||||||||    
T  3537692 gataatgatattacttatcggggacgggataatgtgatgttgtttacttggggaacttataagattgctatgacacctgttttacaatttgataa 3537786  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 26375338 - 26375248
Alignment:
Q  21 gaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattcacgggtatgtt 111  Q
    ||||||||||||||||| |  ||||||||||||||||  |||||||||||| | ||||||||||||| ||||||| |||||||| ||||||    
T  26375338 gaatcagagattttaaactcatagtaatcatccttcaacttgttgtaatatctacgctcatagtattacaaatcagattcacggatatgtt 26375248  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 5646692 - 5646786
Alignment:
Q  17 tatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattcacgggtatgtt 111  Q
    ||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||| | |  |||||||| ||||||||| ||| || ||||||||    
T  5646692 tatcgaatcggagattttaaacttgtagtaatcatccttcaattttttgtaatatctacattcatagtactccaaatcagatttacaggtatgtt 5646786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 18180341 - 18180423
Alignment:
Q  22 aatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattcacgg 104  Q
    |||| ||||||||||| | |||||||||||||||||  |||||||||||| |  ||||| |||||||||||||| ||||||||    
T  18180341 aatcggagattttaaactcgtagtaatcatccttcaacttgttgtaatatctatgctcacagtattccaaatcagattcacgg 18180423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 23570940 - 23570853
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattca 101  Q
    |||||| ||||| ||||||| ||| |||||||||||||||||||   |  |||||||| | ||||||||||||||||||||| |||||    
T  23570940 atatattgaatcggagatttcaaatttgtagtaatcatccttcaaccttgtgtaatatctacgctcatagtattccaaatcagattca 23570853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 22925068 - 22924997
Alignment:
Q  161 gataatgatattacttatgagggaggagataatgagatgatgtttacatggggtacacataagattgctatg 232  Q
    |||||||||||||||||| | ||| | ||||||| |||| ||||||| ||||| || |||||||||||||||    
T  22925068 gataatgatattacttatcaaggacgggataatgtgatgttgtttacttggggaactcataagattgctatg 22924997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 42890842 - 42890755
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattca 101  Q
    ||||| |||||| ||||||| ||  | ||||||||||||| |||  |||||||||||| | |||||||| |||||||||||| |||||    
T  42890842 atataccgaatcggagatttcaatctcgtagtaatcatccgtcaacttgttgtaatatctacgctcataatattccaaatcagattca 42890755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 42891315 - 42891402
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattca 101  Q
    ||||| |||||| ||||||| ||  | ||||||||||||| |||  |||||||||||| | | |||||| |||||||||||| |||||    
T  42891315 atataccgaatcggagatttcaatctcgtagtaatcatccgtcaacttgttgtaatatctacactcataatattccaaatcagattca 42891402  T

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Target: scaffold0240 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 16483 - 16385
Alignment:
Q  13 aatatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatcatattcacgggtatgtt 111  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||| | ||||||| | |  ||||||| | | | |||||| |||||||||||||||    
T  16483 aatatatcgaatctaagattttaaacttgtagtaatcatccttcagtgttttgtaatgtctatgctcatactctactaaatcagattcacgggtatgtt 16385  T

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Target: scaffold0240; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 16354 - 16308
Alignment:
Q  108 tgttattatgaaccctaataaccagaattggtaccccttccctgttc 154  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||||    
T  16354 tgttattatgagccctaataaccaaaattggtactccttccctgttc 16308  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 28252884 - 28252759
Alignment:
Q  161 gataatgatattacttatgagggag--gagataatgagatgatgtttacatggggtacaca--taagattgctatggcccgtgtttttcactttgataaa 256  Q
    |||||||||||||||| |  |||||  |||||||   |||||||||||||||||  |||||  ||||||| ||||| |   |||||| |||||||||||     
T  28252884 gataatgatattacttgttggggagacgagataacatgatgatgtttacatgggacacacacataagatttctatgccttatgttttacactttgataag 28252785  T
Q  257 agcccaagagaaaataagtctagttt 282  Q
    |||||||||||||| ||| |||||||    
T  28252784 agcccaagagaaaagaagactagttt 28252759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 19496925 - 19497006
Alignment:
Q  14 atatatcgaatcagagattttaaaattgtagtaatcatccttcagtttgttgtaatatttgcgctcatagtattccaaatca 95  Q
    |||| |||||||  |||||||||| | || |||||||||||||| ||| || |||||  | || ||||||||||||||||||    
T  19496925 atatttcgaatcgtagattttaaactcgttgtaatcatccttcaatttattttaatacctacgttcatagtattccaaatca 19497006  T

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