View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7564_low_1 (Length: 505)
Name: NF7564_low_1
Description: NF7564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7564_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 244 - 487
Target Start/End: Original strand, 1889693 - 1889934
Alignment:
| Q |
244 |
atatacgagttatattctttaatgatgtgaaatcacatttaattactcgacatttcaactttggattaaaaaactctcttacaannnnnnnnnnnnnnnn |
343 |
Q |
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| T |
1889693 |
atatacaagttatattctttaatgatgtgaaatcacatttaattactcgacatttcaactttggattaaaaaactctcttacaattttattttttatttt |
1889792 |
T |
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| Q |
344 |
nctaatgcaacnnnnnnnnnnttctttctcatttacattgattaaatgtaatcatattcctttattaaaaaatataatcatattattttgaaatacatta |
443 |
Q |
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| T |
1889793 |
tctaatgcaacaaaaaaaa--ttctttctcatttacattggttaaatgtaatcatattcctttatttaaaaatataatcatattattttgaaatacatta |
1889890 |
T |
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| Q |
444 |
tttatggtccaaacgagcattgtcacatataactctacattatt |
487 |
Q |
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| T |
1889891 |
tttatggtccaaacgagcattgtcacatataactctacattatt |
1889934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 1889511 - 1889634
Alignment:
| Q |
77 |
ttaaaagcttcttatacttacttgcttctttcaaacacaaacacacttaatttttattggatattggtgtaagactatcttacacctcgtccaatttttc |
176 |
Q |
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| T |
1889511 |
ttaaaagcttcttatacttatttgcttctttcaaacacaaacacacttaatttttattggatgttggtgtaaga-----ttacacctcgtccaatttttc |
1889605 |
T |
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| Q |
177 |
ttaattatttaagtttcttacaaatataa |
205 |
Q |
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| T |
1889606 |
ttaattatttaagtttcttacaaatataa |
1889634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 27906807 - 27906861
Alignment:
| Q |
27 |
aaaattgcttttctcacatcaaaagttttttaaaaacacatcaaaatgacttaaa |
81 |
Q |
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| T |
27906807 |
aaaattgtttttctcacatcaaattttttctaaaagcacataaaaatgacttaaa |
27906861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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