View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7564_low_5 (Length: 240)

Name: NF7564_low_5
Description: NF7564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7564_low_5
NF7564_low_5
[»] chr5 (1 HSPs)
chr5 (1-231)||(37214073-37214303)
[»] chr4 (2 HSPs)
chr4 (1-231)||(45164944-45165174)
chr4 (48-231)||(14024948-14025131)
[»] chr1 (3 HSPs)
chr1 (1-231)||(2407070-2407300)
chr1 (48-231)||(2792555-2792738)
chr1 (48-231)||(14473591-14473774)
[»] chr3 (5 HSPs)
chr3 (134-231)||(8533467-8533564)
chr3 (1-127)||(8533607-8533733)
chr3 (48-231)||(5380061-5380244)
chr3 (48-204)||(13719828-13719984)
chr3 (48-127)||(4101692-4101771)
[»] scaffold0015 (1 HSPs)
scaffold0015 (48-231)||(26243-26426)
[»] chr8 (1 HSPs)
chr8 (48-231)||(89663-89846)
[»] chr7 (2 HSPs)
chr7 (48-231)||(11714517-11714700)
chr7 (48-206)||(11710180-11710338)
[»] chr6 (1 HSPs)
chr6 (48-206)||(32706191-32706349)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37214303 - 37214073
Alignment:
Q  1 tcttaagttccgtaaagctcttatcagcttcttcggaccacctaaatttatctcctttgatgcattctataagtggggtggcaaccgagctaaagttttt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37214303 tcttaagttccttaaagctcttatcagcttcttcggaccacctaaatttatctcctttgatgcattctataagtggggtggcaaccgagctaaagttttt 37214204  T
Q  101 aatgaaccttctgtagaaagaagctaagccgtgaaaactccttatatcatggacagactttggagttggccagctgttgatagcttcaatcttgcttggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37214203 aatgaaccttctgtagaaagaagctaagccgtgaaaactccttatatcatggacagactttggagttggccagctgttgatagcttcaatcttgcttggg 37214104  T
Q  201 tcaacttttattcctccagcagtgatgatgt 231  Q
    |||||||||||||||||||||||||||||||    
T  37214103 tcaacttttattcctccagcagtgatgatgt 37214073  T

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Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 45165174 - 45164944
Alignment:
Q  1 tcttaagttccgtaaagctcttatcagcttcttcggaccacctaaatttatctcctttgatgcattctataagtggggtggcaaccgagctaaagttttt 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  45165174 tcttaagttccttaaagctcttatcagcttcttcggaccacctaaatttatctcctttgatgcattctgtaagtggggtggcaatcgagctaaagttttt 45165075  T
Q  101 aatgaaccttctgtagaaagaagctaagccgtgaaaactccttatatcatggacagactttggagttggccagctgttgatagcttcaatcttgcttggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45165074 aatgaaccttctgtagaaagaagctaagccgtgaaaactccttatatcatggacagactttggagttggccagctgttgatagcttcaatcttgcttggg 45164975  T
Q  201 tcaacttttattcctccagcagtgatgatgt 231  Q
    |||||||||||||||||||||||||||||||    
T  45164974 tcaacttttattcctccagcagtgatgatgt 45164944  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 14025131 - 14024948
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    |||||||| || ||||| ||| |||| ||||| ||||| ||||||||||| || ||||||||||| || || |||||||| || || ||||| || | ||    
T  14025131 ttatctccctttatgcaatctgtaagcggggtagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccatggaaacttctcacat 14025032  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaacttttattcctccagcagtgatgatgt 231  Q
    |||| |  ||||||||| | ||||| || |||||||| |||| |||||| ||||||||||  || ||| |||||||||| ||||    
T  14025031 catgaaatgactttggaataggccaactattgatagcctcaaccttgctggggtcaacttgaataccttcagcagtgattatgt 14024948  T

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Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2407070 - 2407300
Alignment:
Q  1 tcttaagttccgtaaagctcttatcagcttcttcggaccacctaaatttatctcctttgatgcattctataagtggggtggcaaccgagctaaagttttt 100  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||    
T  2407070 tcttaagttccttaaagctcttatcagcttcttcagaccacctaaatttatctcctttgatgcattctgtaagtggggtggaaactgagataaagttttt 2407169  T
Q  101 aatgaaccttctgtagaaagaagctaagccgtgaaaactccttatatcatggacagactttggagttggccagctgttgatagcttcaatcttgcttggg 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2407170 aatgaaccttttgtagaaagaagctaagccgtgaaaactccttatgtcatggacagactttggagttggccagctgttgatagcttcaatcttgcttggg 2407269  T
Q  201 tcaacttttattcctccagcagtgatgatgt 231  Q
    |||||||||||||||| ||||||||||||||    
T  2407270 tcaacttttattcctctagcagtgatgatgt 2407300  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 2792555 - 2792738
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    |||||||| || ||||| ||| |||| ||||  ||||| ||||||||||| || ||||||||||| || || |||||||| || |  ||||| || | ||    
T  2792555 ttatctccctttatgcaatctgtaagcggggcagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccatagaaacttctcacat 2792654  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaacttttattcctccagcagtgatgatgt 231  Q
    |||| |  ||||||||| | ||||| || |||||||| |||| |||||| |||||||||   || ||| |||||||||| ||||    
T  2792655 catgaattgactttggaataggccaactattgatagcctcaaccttgctggggtcaactcgaataccttcagcagtgattatgt 2792738  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 14473591 - 14473774
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    |||||||| || ||||| ||| |||| ||||  ||||| ||||||||||| || ||||||||||| || || |||||||| || |||||| | ||||  |    
T  14473591 ttatctccctttatgcaatctgtaagcggggcagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccatgaaaatttcttacgt 14473690  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaacttttattcctccagcagtgatgatgt 231  Q
    |||| |  ||||| ||| | ||||| || ||||| || |||| |||||| |||||||||   || ||| |||||||||| ||||    
T  14473691 catgaattgacttgggaataggccaactattgatggcctcaaccttgctggggtcaactcgaataccttcagcagtgattatgt 14473774  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 8533564 - 8533467
Alignment:
Q  134 aaaactccttatatcatggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaacttttattcctccagcagtgatgatgt 231  Q
    |||||||||||||||||| ||| |||||||||||| |||  ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  8533564 aaaactccttatatcatgaacatactttggagttgaccaattgttgatagcttcaatcttgcttgggtcaacttttatgccttcaacagtgatgatgt 8533467  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 8533733 - 8533607
Alignment:
Q  1 tcttaagttccgtaaagctcttatcagcttcttcggaccacctaaatttatctcctttgatgcattctataagtggggtggcaaccgagctaaagttttt 100  Q
    |||| ||||||  |||| ||||||  |||||||| ||||| || | ||| |||| ||||||||||| | |||| |||| ||||| |||||||||||||||    
T  8533733 tctttagttcctcaaagttcttattggcttcttctgaccatctgattttctctcttttgatgcattatgtaagaggggcggcaatcgagctaaagttttt 8533634  T
Q  101 aatgaaccttctgtagaaagaagctaa 127  Q
    |||||||||| ||||||||||||||||    
T  8533633 aatgaaccttttgtagaaagaagctaa 8533607  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 5380061 - 5380244
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    ||||| ||||| ||||| ||| |||||||||  ||||| ||||||||||| || ||||||||||| || || |||||||| || || ||||| || | ||    
T  5380061 ttatccccttttatgcaatctgtaagtggggcagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccatggaaacttctcacat 5380160  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaacttttattcctccagcagtgatgatgt 231  Q
    |||| |  ||||||||| | ||||| || |||||||| |||| |||||| |||||||||   || ||| |||||||||| ||||    
T  5380161 catgaattgactttggaataggccaactattgatagcctcaaccttgctggggtcaactcgaataccttcagcagtgattatgt 5380244  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 13719828 - 13719984
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    |||||||| || ||||| ||| |||| ||||  ||||| ||||||||||| || ||||||||||| || || |||||||| || | |||| | || | ||    
T  13719828 ttatctccctttatgcaatctgtaagcggggcagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccataaaaaattctaacat 13719927  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaa 204  Q
    |||| |  ||||| ||| | ||||| || |||||||| |||| |||||| |||||||    
T  13719928 catgaattgacttaggaataggccaactattgatagcctcaaccttgctagggtcaa 13719984  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 4101771 - 4101692
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaa 127  Q
    ||||||||||| ||||| ||| |||||||||  ||||| || |||||||| || ||||||||||| || || ||||||||    
T  4101771 ttatctccttttatgcaatctgtaagtggggcagcaacagaactaaagttcttgatgaaccttctataaaatgaagctaa 4101692  T

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Target: scaffold0015 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 26243 - 26426
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    |||||||| || ||||| ||| |||| ||||  ||||| ||||||||||| || ||||||||||| || || |||||||| || || ||||| || | ||    
T  26243 ttatctccctttatgcaatctgtaagcggggcagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccatggaaacttctcacat 26342  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaacttttattcctccagcagtgatgatgt 231  Q
    |||| |  ||||||||| | ||||| || |||||||| |||| |||||| |||||||||   || ||| |||||||||| ||||    
T  26343 catgaattgactttggaataggccaactattgatagcctcaaccttgctggggtcaactcgaataccttcagcagtgattatgt 26426  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 89846 - 89663
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    |||||||| || ||||| ||| |||| ||||  ||||| ||||||||||| || ||||||||||| || || |||||||| || || ||||| || | ||    
T  89846 ttatctccctttatgcaatctgtaagcggggcagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccatggaaacttctcacat 89747  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaacttttattcctccagcagtgatgatgt 231  Q
    |||| |  ||||||||| | ||||| || |||||||| |||| |||||| |||||||||   || ||| |||||||||| ||||    
T  89746 catgaattgactttggaataggccaactattgatagcctcaaccttgctggggtcaactcgaataccttcagcagtgattatgt 89663  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 11714700 - 11714517
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    |||||||| || ||||| ||| |||| ||||  ||||| ||||||||||| || ||||||||||| || || |||||||| || || ||||| || | ||    
T  11714700 ttatctccctttatgcaatctgtaagcggggcagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccatggaaacttctcacat 11714601  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaacttttattcctccagcagtgatgatgt 231  Q
    |||| |  ||||||||| | ||||| || |||||||| |||| |||||| |||||||||   || ||| |||||||||| ||||    
T  11714600 catgaattgactttggaataggccaactattgatagcctcaaccttgctggggtcaactcgaataccttcagcagtgattatgt 11714517  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 11710338 - 11710180
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    |||||||| || ||||| ||| |||| ||||  ||||| ||||||||||| || ||||||||||| || || |||||||| || || ||||| || | ||    
T  11710338 ttatctccctttatgcaatctgtaagcggggcagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccatggaaacttctcacat 11710239  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaact 206  Q
    |||| |  ||||||||| | ||||| || |||||||| |||| |||||| |||||||||    
T  11710238 catgaattgactttggaataggccacctattgatagcctcaaccttgctggggtcaact 11710180  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 32706349 - 32706191
Alignment:
Q  48 ttatctcctttgatgcattctataagtggggtggcaaccgagctaaagtttttaatgaaccttctgtagaaagaagctaagccgtgaaaactccttatat 147  Q
    |||||||| || ||||| ||| |||| ||||  ||||| ||||||||||| || ||||||||||| || || |||||||| || || ||||| || | ||    
T  32706349 ttatctccctttatgcaatctgtaagcggggcagcaacagagctaaagttcttgatgaaccttctataaaatgaagctaatccatggaaacttctcacat 32706250  T
Q  148 catggacagactttggagttggccagctgttgatagcttcaatcttgcttgggtcaact 206  Q
    |||| |  ||||||||| | ||||| || |||||||| |||| |||| | |||||||||    
T  32706249 catgaattgactttggaataggccaactattgatagcctcaaccttgttggggtcaact 32706191  T

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