View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7565_high_2 (Length: 218)
Name: NF7565_high_2
Description: NF7565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7565_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 42179191 - 42179409
Alignment:
| Q |
1 |
ttagtgctcaattttctttattagaaaaagatatggaaattttcttctactnnnnnnng--aaaggcaaactgaaaagttgggcataatatttggataga |
98 |
Q |
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| T |
42179191 |
ttagtgctcaattttctttattagaaaaagatatggaaattt-cttctactaaaaaaaagaaaaggcaaactgaaaagttgggcataaaatttggataga |
42179289 |
T |
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| Q |
99 |
ctataccatgttagaatttggatggaatttaattcaattttacaaaattgacttgtaaagtaaagattgcattcacttataaatatattgtcaaacttcg |
198 |
Q |
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| T |
42179290 |
ctataccatgttagaatttggatcgaacttaattcaattttacaaaattgacgtgtaaagtaaagattgcattcacttataaatatattgtcaaacttcg |
42179389 |
T |
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| Q |
199 |
tgttatcttgtcgtctctta |
218 |
Q |
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| T |
42179390 |
tgttatcttgtcgtctctta |
42179409 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 30394765 - 30394721
Alignment:
| Q |
115 |
tttggatggaatttaattcaattttacaaaattgacttgtaaagt |
159 |
Q |
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| T |
30394765 |
tttggattgaatctaattcaatcttacaaaatcgacttgtaaagt |
30394721 |
T |
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