View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7566_high_1 (Length: 1169)

Name: NF7566_high_1
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7566_high_1
NF7566_high_1
[»] chr7 (16 HSPs)
chr7 (8-314)||(20145813-20146119)
chr7 (26-314)||(14986989-14987278)
chr7 (26-314)||(15416600-15416889)
chr7 (10-314)||(2546914-2547215)
chr7 (14-230)||(17600539-17600754)
chr7 (48-310)||(24832402-24832670)
chr7 (8-230)||(3743380-3743608)
chr7 (55-217)||(4173452-4173615)
chr7 (382-475)||(2545771-2545864)
chr7 (322-463)||(20146231-20146371)
chr7 (318-460)||(14986744-14986882)
chr7 (318-460)||(15416355-15416493)
chr7 (343-462)||(4173104-4173222)
chr7 (106-210)||(10649240-10649344)
chr7 (59-191)||(18046371-18046501)
chr7 (428-464)||(2563197-2563233)
[»] chr8 (23 HSPs)
chr8 (8-314)||(28371034-28371341)
chr8 (13-229)||(9218079-9218298)
chr8 (318-574)||(28371450-28371705)
chr8 (345-463)||(23539981-23540099)
chr8 (99-230)||(23540219-23540351)
chr8 (11-137)||(10660970-10661095)
chr8 (58-230)||(9286326-9286498)
chr8 (96-230)||(16600591-16600725)
chr8 (130-292)||(10661748-10661911)
chr8 (69-211)||(13110204-13110345)
chr8 (382-460)||(10662109-10662187)
chr8 (99-146)||(26136195-26136242)
chr8 (69-209)||(18672125-18672261)
chr8 (58-164)||(22713661-22713767)
chr8 (166-230)||(24577344-24577408)
chr8 (382-559)||(16600980-16601159)
chr8 (73-208)||(25095052-25095187)
chr8 (58-230)||(27123582-27123752)
chr8 (110-161)||(15340931-15340983)
chr8 (110-161)||(15429996-15430048)
chr8 (110-161)||(15521300-15521352)
chr8 (110-161)||(41652021-41652073)
chr8 (73-119)||(9006930-9006976)
[»] chr2 (17 HSPs)
chr2 (6-314)||(18929235-18929543)
chr2 (8-300)||(26650839-26651133)
chr2 (318-555)||(18929651-18929887)
chr2 (14-217)||(17402729-17402932)
chr2 (27-242)||(25520385-25520601)
chr2 (58-217)||(31404046-31404205)
chr2 (379-559)||(17403198-17403377)
chr2 (343-462)||(26651281-26651400)
chr2 (179-314)||(19878981-19879117)
chr2 (58-314)||(24543870-24544126)
chr2 (1082-1151)||(17403898-17403967)
chr2 (91-217)||(20478255-20478379)
chr2 (407-527)||(25519999-25520118)
chr2 (106-219)||(29891263-29891376)
chr2 (110-161)||(28760672-28760724)
chr2 (73-159)||(17162015-17162101)
chr2 (58-159)||(17636690-17636791)
[»] chr5 (28 HSPs)
chr5 (34-301)||(19217911-19218177)
chr5 (48-306)||(20064388-20064653)
chr5 (48-314)||(20060802-20061075)
chr5 (99-314)||(20713228-20713443)
chr5 (99-315)||(23210024-23210240)
chr5 (48-314)||(20058550-20058824)
chr5 (325-532)||(20064063-20064265)
chr5 (99-312)||(25951315-25951528)
chr5 (343-463)||(25951664-25951783)
chr5 (343-462)||(20058300-20058418)
chr5 (365-463)||(21165557-21165655)
chr5 (343-465)||(23209772-23209893)
chr5 (130-230)||(23379373-23379474)
chr5 (58-217)||(17167275-17167433)
chr5 (58-164)||(19924022-19924128)
chr5 (10-206)||(23355581-23355777)
chr5 (58-191)||(24878356-24878489)
chr5 (343-462)||(20061207-20061323)
chr5 (1084-1151)||(24879513-24879580)
chr5 (58-164)||(19926749-19926855)
chr5 (79-212)||(17987487-17987619)
chr5 (418-462)||(19217727-19217771)
chr5 (343-416)||(20713575-20713647)
chr5 (381-489)||(24878782-24878889)
chr5 (418-493)||(17987914-17987988)
chr5 (383-493)||(22011479-22011588)
chr5 (10-41)||(24878288-24878319)
chr5 (110-159)||(31533052-31533102)
[»] chr3 (25 HSPs)
chr3 (8-314)||(15686859-15687166)
chr3 (15-242)||(24699049-24699275)
chr3 (14-230)||(26010836-26011055)
chr3 (27-210)||(13428733-13428914)
chr3 (382-560)||(9033046-9033225)
chr3 (10-315)||(4765605-4765916)
chr3 (35-230)||(4769742-4769937)
chr3 (99-314)||(7148790-7149005)
chr3 (8-230)||(4832516-4832740)
chr3 (91-314)||(9033398-9033622)
chr3 (102-314)||(29614512-29614724)
chr3 (341-530)||(4765286-4765475)
chr3 (64-206)||(23378488-23378631)
chr3 (346-559)||(4770096-4770307)
chr3 (99-230)||(16242937-16243069)
chr3 (343-461)||(24698727-24698845)
chr3 (382-462)||(15687340-15687420)
chr3 (367-460)||(16242605-16242699)
chr3 (344-462)||(29614037-29614155)
chr3 (68-191)||(27304424-27304547)
chr3 (341-449)||(4832190-4832300)
chr3 (68-142)||(8737234-8737308)
chr3 (68-142)||(9089472-9089546)
chr3 (73-119)||(13409833-13409879)
chr3 (379-462)||(13428406-13428488)
[»] chr6 (20 HSPs)
chr6 (8-236)||(22397548-22397777)
chr6 (99-314)||(16177304-16177519)
chr6 (346-559)||(17525233-17525444)
chr6 (103-315)||(15830026-15830238)
chr6 (17-217)||(17524797-17524998)
chr6 (99-230)||(1177214-1177349)
chr6 (401-529)||(31125745-31125872)
chr6 (58-191)||(18713709-18713842)
chr6 (58-191)||(17947890-17948023)
chr6 (58-163)||(14762985-14763090)
chr6 (382-556)||(22394009-22394179)
chr6 (48-314)||(31126065-31126351)
chr6 (378-462)||(16177672-16177759)
chr6 (344-421)||(1176918-1176994)
chr6 (60-161)||(28712360-28712461)
chr6 (110-161)||(13002854-13002906)
chr6 (365-451)||(32784447-32784534)
chr6 (73-143)||(25945846-25945916)
chr6 (110-159)||(24154179-24154229)
chr6 (117-161)||(10163272-10163317)
[»] chr4 (9 HSPs)
chr4 (8-242)||(11361595-11361830)
chr4 (15-216)||(9409168-9409370)
chr4 (320-463)||(11362017-11362160)
chr4 (58-230)||(16675086-16675259)
chr4 (99-161)||(5358040-5358102)
chr4 (58-230)||(4697454-4697626)
chr4 (73-120)||(18558469-18558516)
chr4 (111-161)||(26654144-26654195)
chr4 (418-496)||(10071001-10071078)
[»] chr1 (17 HSPs)
chr1 (53-314)||(20146169-20146437)
chr1 (34-314)||(11013745-11014027)
chr1 (64-314)||(33103021-33103273)
chr1 (322-459)||(20146549-20146686)
chr1 (341-462)||(11013493-11013614)
chr1 (58-230)||(36571655-36571826)
chr1 (102-229)||(20150435-20150563)
chr1 (381-574)||(22619579-22619770)
chr1 (78-228)||(22607834-22607984)
chr1 (102-314)||(13201980-13202192)
chr1 (72-230)||(17615272-17615430)
chr1 (101-191)||(22620063-22620153)
chr1 (58-130)||(20866221-20866293)
chr1 (179-242)||(13232737-13232801)
chr1 (80-119)||(20886571-20886610)
chr1 (110-160)||(23455191-23455242)
chr1 (381-463)||(17615684-17615766)
[»] scaffold0555 (2 HSPs)
scaffold0555 (53-314)||(5582-5851)
scaffold0555 (322-455)||(5337-5470)
[»] scaffold0264 (2 HSPs)
scaffold0264 (8-314)||(20793-21097)
scaffold0264 (341-452)||(21225-21337)
[»] scaffold0002 (2 HSPs)
scaffold0002 (58-314)||(374041-374294)
scaffold0002 (406-559)||(373696-373847)
[»] scaffold0337 (2 HSPs)
scaffold0337 (58-230)||(17221-17392)
scaffold0337 (58-173)||(4546-4661)
[»] scaffold0795 (2 HSPs)
scaffold0795 (318-462)||(5725-5869)
scaffold0795 (254-314)||(5971-6031)
[»] scaffold0016 (1 HSPs)
scaffold0016 (130-230)||(12991-13092)
[»] scaffold0161 (1 HSPs)
scaffold0161 (343-455)||(5276-5388)
[»] scaffold0142 (1 HSPs)
scaffold0142 (89-242)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (106-230)||(871-996)
[»] scaffold0040 (1 HSPs)
scaffold0040 (58-161)||(26930-27031)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 3e-94; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 20145813 - 20146119
Alignment:
Q  8 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 107  Q
    |||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||    
T  20145813 tgtggcgtctttcgacagaaaa-aggttttaaaagcaaagtaaatgcattaactttaaattgcagaaacttcaaggaaaggtagaatacaatgcattaaa 20145911  T
Q  108 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| || |||||||||||| || || ||||||||||    
T  20145912 aataaaggtggttcgacaaatcctttacatacattctttatgactctcttctctcgcgccagtacttcgagtgttttagaattatgcatgggtgatttgc 20146011  T
Q  208 gacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgctt 306  Q
    ||||||||||  ||||| ||||||  |||| ||||| ||  | ||| |||||||||||| |||||||| ||||||||| |||||||| |||||| |||||    
T  20146012 gacccgttttacctatgaaaaactactatttatacataggaaataacttggaaagaaactaatcccacgatcagcactccttccatgaagacaaccgctt 20146111  T
Q  307 gtctccca 314  Q
    ||||||||    
T  20146112 gtctccca 20146119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 26 - 314
Target Start/End: Complemental strand, 14987278 - 14986989
Alignment:
Q  26 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtggttcgac 124  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| |||||| ||||| |||| ||||| ||||   |||||||||||||||||||||||     
T  14987278 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 14987179  T
Q  125 aaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatg 223  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||| |||||||| ||||  |||||    
T  14987178 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatg 14987079  T
Q  224 gaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    ||||||||||||| ||||||||| | |||  |||||||||||  ||| ||| |||| |||| ||||||||||||||| |||||||||||||    
T  14987078 gaaaactcttatttatacaaagaaaataa-gtggaaagaaacttatctcacgatcatcactccttccatgtagacaaccgcttgtctccca 14986989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 26 - 314
Target Start/End: Complemental strand, 15416889 - 15416600
Alignment:
Q  26 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtggttcgac 124  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| |||||| ||||| |||| ||||| ||||   |||||||||||||||||||||||     
T  15416889 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 15416790  T
Q  125 aaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatg 223  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||| |||||||| ||||  |||||    
T  15416789 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatg 15416690  T
Q  224 gaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    ||||||||||||| ||||||||| | |||  |||||||||||  ||| ||| |||| |||| ||||||||||||||| |||||||||||||    
T  15416689 gaaaactcttatttatacaaagaaaataa-gtggaaagaaacttatctcacgatcatcactccttccatgtagacaaccgcttgtctccca 15416600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 2546914 - 2547215
Alignment:
Q  10 tggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaa 109  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||     ||||    
T  2546914 tggcgtctttcgacggaaaaaaggttttaaaagcaaagaaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatg----taaaa 2547009  T
Q  110 taaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcga 209  Q
    ||||||||||  | |||||||||||||| |||||||||||||| ||||||||||   |||||||| || |||||||||||| | ||||||||||||||||    
T  2547010 taaaggtggtctgccaaatcctttacatccattctttatgacttttttctctcgggtcggtacttcgagtgttttagaattctatataggtgatttgcga 2547109  T
Q  210 cccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgt 308  Q
    ||||||||  |||||||||||| ||| | ||||| ||| |   |  | ||||||||| |||||||| |||| |||| ||||||||||||||| |||||||    
T  2547110 cccgttttccctatggaaaactattacttatacatagaaaaataactagaaagaaactaatcccacgatcaacactccttccatgtagacaaccgcttgt 2547209  T
Q  309 ctccca 314  Q
    ||||||    
T  2547210 ctccca 2547215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 17600539 - 17600754
Alignment:
Q  14 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaa 113  Q
    ||||||||||| ||||||||||||||||| ||||| |||| |  | ||||||||| || |||| |||||||||| ||| |||||| ||||||||||||||    
T  17600539 gtctttcgacaaaaaaaaggttttaaaagaaaagtaaaggaa--aggtttaaattccataaacttaaaggaaagataacatacaaagcattaaaaataaa 17600636  T
Q  114 ggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccg 213  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| || |||||||||||| ||||||||||||||||||| ||    
T  17600637 ggttgttcgacaaatcctttacatacattctttatgactctttcctctcgtgccggtacttcgagtgttttagaattctgtataggtgatttgcgacacg 17600736  T
Q  214 tttttc-tatggaaaact 230  Q
    |||| | |||||||||||    
T  17600737 ttttccttatggaaaact 17600754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 48 - 310
Target Start/End: Original strand, 24832402 - 24832670
Alignment:
Q  48 ttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacataca 140  Q
    |||| |||||||||||||||||||||||| ||||| ||||  |||||||||       |||||||||||||| ||||||||||||||| |||||||||||    
T  24832402 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataatggtggttcgacaaattctttacataca 24832501  T
Q  141 ttctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttattaat 239  Q
    ||||||||||||||||||||| || ||| ||||| || ||||||| |||| |||||||| |||||||||||||||||  ||||| |||||| ||||| ||    
T  24832502 ttctttatgactcttttctcttgcgccgatacttcgagtgtttta-aattctgtataggcgatttgcgacccgttttccctatgaaaaactattatttat 24832600  T
Q  240 acaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtct 310  Q
    ||| ||  | |||  | ||||||||| |||| ||  |||| |||| ||||||||||||||| |||||||||    
T  24832601 acataggaaataa-gtagaaagaaactaatctcatgatcaccactccttccatgtagacaaccgcttgtct 24832670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 3743380 - 3743608
Alignment:
Q  8 tgtggcgtctttcgacagaaaaaaggtttt--aaaagcaaagttaaggcatt-aagttt-aaattgcagaaacgtaaaggaaaggtaaaatacaatgcat 103  Q
    ||||| ||||||||||| ||||| ||||||  || || ||||| |||||||| |||||| ||||||||||| | | |||||||  |||| ||||| ||||    
T  3743380 tgtggtgtctttcgacaaaaaaagggttttttaacagtaaagtaaaggcattcaagtttgaaattgcagaatcttgaaggaaaaataaagtacaaggcat 3743479  T
Q  104 taaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatg-ttttagaattttgtataggtga 202  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||   || ||||||||| || || |||||||||| |||||||||||    
T  3743480 taaaaataaaggtggttcgacaaatcctttgtatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtga 3743579  T
Q  203 tttgcgacccgtttt-tctatggaaaact 230  Q
    ||||||||||||||| ||| |||||||||    
T  3743580 tttgcgacccgttttctctttggaaaact 3743608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 55 - 217
Target Start/End: Complemental strand, 4173615 - 4173452
Alignment:
Q  55 attaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactc 153  Q
    |||||||||||||||||||||| ||||| |||    |||| ||| ||||||||| |||||  | ||||||||||||||||||||||||||||||||||||    
T  4173615 attaagtttaaattgcagaaacttaaagaaaaatacaaatgcaagtgcattaaagataaaactagttcgacaaatcctttacatacattctttatgactc 4173516  T
Q  154 ttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt 217  Q
    |||||||||||  || ||||| || |||||||||||| | |||||| |||||||||||||||||    
T  4173515 ttttctctcgcgtcgatacttcgagtgttttagaattctctataggcgatttgcgacccgtttt 4173452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 382 - 475
Target Start/End: Original strand, 2545771 - 2545864
Alignment:
Q  382 aaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaa 475  Q
    |||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  2545771 aaaagacttcgattcctgcaagagtaaaagtcaagtaatgttgaccacattaaatgaggctggtgaaattaccagctaacaaattgcctcccaa 2545864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 322 - 463
Target Start/End: Original strand, 20146231 - 20146371
Alignment:
Q  322 aaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatg 421  Q
    |||||||| |||||||| | |||||| ||||||||||| ||||||||||||| |  |||| |||  |||| ||||||  || ||||||| ||||| ||||    
T  20146231 aaggcttcaagacttttta-tgctaactccaacatctcgttgaaactcctttaacagaaggaaaagcttcgattcctttaacagtaaaagtcaactaatg 20146329  T
Q  422 ttgaccacattaaatgaggctggtgaaaataccagctaacaa 463  Q
    |||||||||||| || | |||| ||||||||||| |||||||    
T  20146330 ttgaccacattacataacgctgatgaaaataccatctaacaa 20146371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 318 - 460
Target Start/End: Complemental strand, 14986882 - 14986744
Alignment:
Q  318 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaag-aaaagacttcaattcctgcaagagtaaaaatcaac 416  Q
    ||||||||||| | ||| |||  |||  ||||| |||||||| |||||||| |||| |||| || |||| ||||  |||||||||||||||||| |||||    
T  14986882 ctttaaggctttgggacattttcatgtgaagtctaacatctcgttgaaacttcttttattggagaaaaatacttggattcctgcaagagtaaaagtcaac 14986783  T
Q  417 caatgttgaccacattaaatgaggctggtgaaaataccagctaa 460  Q
     ||||||||||     ||||||||||||||||||||||||||||    
T  14986782 taatgttgacc-----aaatgaggctggtgaaaataccagctaa 14986744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 318 - 460
Target Start/End: Complemental strand, 15416493 - 15416355
Alignment:
Q  318 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaag-aaaagacttcaattcctgcaagagtaaaaatcaac 416  Q
    ||||||||||| | ||| |||  |||  ||||| |||||||| |||||||| |||| |||| || |||| ||||  |||||||||||||||||| |||||    
T  15416493 ctttaaggctttgggacattttcatgtgaagtctaacatctcgttgaaacttcttttattggagaaaaatacttggattcctgcaagagtaaaagtcaac 15416394  T
Q  417 caatgttgaccacattaaatgaggctggtgaaaataccagctaa 460  Q
     ||||||||||     ||||||||||||||||||||||||||||    
T  15416393 taatgttgacc-----aaatgaggctggtgaaaataccagctaa 15416355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 343 - 462
Target Start/End: Complemental strand, 4173222 - 4173104
Alignment:
Q  343 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 442  Q
    |||| |||||||||||| | ||| ||| ||||||||||| ||| ||||  || ||||||| | || || ||||| |||||||| |||||||||| ||||     
T  4173222 gctaggtccaacatctcgtcgaa-ctcttttgattgaaggaaatactttgatacctgcaaaattataagtcaactaatgttgaacacattaaataaggca 4173124  T
Q  443 ggtgaaaataccagctaaca 462  Q
    ||||||||||||||||||||    
T  4173123 ggtgaaaataccagctaaca 4173104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 10649344 - 10649240
Alignment:
Q  106 aaaataaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatt 204  Q
    ||||||||||||||| |  |||||  |||||||||||||||||| ||||||||||||||  ||||||||| || |||||| ||| ||| |||| ||||||    
T  10649344 aaaataaaggtggtttggaaaatcagtttacatacattctttataactcttttctctcgtgccggtacttcgagtgtttt-gaaatttctataagtgatt 10649246  T
Q  205 tgcgac 210  Q
    ||||||    
T  10649245 tgcgac 10649240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 18046371 - 18046501
Alignment:
Q  59 agtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactctttt 157  Q
    ||||||||  ||| |||| ||||| ||||||||| | || |||||||||| |||||||||||||||||||| | ||||| ||||| | ||||   |||||    
T  18046371 agtttaaaacgcaaaaacttaaagaaaaggtaaattgcattgcattaaaa-taaaggtggttcgacaaatcatattacacacattatgtatg--cctttt 18046467  T
Q  158 ctctcgctccggtactttgaatgttttagaattt 191  Q
     |||||| |||||||||  | |||||||||||||    
T  18046468 ttctcgcgccggtacttcaattgttttagaattt 18046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 2563197 - 2563233
Alignment:
Q  428 acattaaatgaggctggtgaaaataccagctaacaaa 464  Q
    |||||||||||||||||||||| ||||||||||||||    
T  2563197 acattaaatgaggctggtgaaattaccagctaacaaa 2563233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 2e-92; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 28371034 - 28371341
Alignment:
Q  8 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 107  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  28371034 tgtggcgtctttcgacagaaaaatggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaacttaaaggaacagtaaaatacaatgcattaaa 28371133  T
Q  108 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgc 207  Q
    |||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||| | | ||||||| || |||||||||||||| ||||||||||||||    
T  28371134 aataaaggaggttcgacaaatactttacatacattctttatgacttttttcactcacactggtacttcgagtgttttagaattttatataggtgatttgc 28371233  T
Q  208 gacccgtttt-tctatggaaaactcttattaataca-aagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgct 305  Q
    ||||| ||||  ||||||||||||  |||| ||||| |||| | ||| |||||||||||| |||| ||| ||||||||| ||||||||||||||| ||||    
T  28371234 gacccattttccctatggaaaactactatttatacataaga-aataacttggaaagaaactaatctcacgatcagcactccttccatgtagacaaccgct 28371332  T
Q  306 tgtctccca 314  Q
    |||||||||    
T  28371333 tgtctccca 28371341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 9218079 - 9218298
Alignment:
Q  13 cgtctttcgacagaaaaaa----ggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaa 108  Q
    |||||||||||||||||||    | ||||||||||||||| ||  ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  9218079 cgtctttcgacagaaaaaaaaaggtttttaaaagcaaagtaaaaacattaagtttaaattgcagaaacttaaaggaaagataaaatacaatgcattaaaa 9218178  T
Q  109 ataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcg 208  Q
    |||||| |||||||||||||| |||||||||||||| |||||  ||||||||||||  |||||||| || |||||||||||| |||||| ||||||||||    
T  9218179 ataaagatggttcgacaaatcatttacatacattctgtatga--cttttctctcgcgtcggtacttcgagtgttttagaattctgtatatgtgatttgcg 9218276  T
Q  209 acccgtttt-tctatggaaaac 229  Q
    |||||||||  |||||||||||    
T  9218277 acccgttttccctatggaaaac 9218298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 318 - 574
Target Start/End: Original strand, 28371450 - 28371705
Alignment:
Q  318 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaacc 417  Q
    |||||||||||| ||||||||  ||||||||||||||||||| |  |||||||||| | ||| | ||||  ||| |||||| | ||| ||||| |||||     
T  28371450 ctttaaggcttccagactttttcatgctaagtccaacatctcgtcaaaactcctttaactgagggaaaggtttcgattcctaccagaataaaagtcaact 28371549  T
Q  418 aatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattg 517  Q
    ||| ||| ||||||||||| | ||| |||||||||||| ||||||||||| || |||| |||||  ||||||||| ||||| | ||||  ||||||||||    
T  28371550 aatattggccacattaaattatgctagtgaaaataccaactaacaaattg-ccaccaaaaaatgttattttcgactgaatacattcaaaagagagaattg 28371648  T
Q  518 acatttttgagaaaacgctaagtatttcaaagcatgatgtcacaattatcatgactt 574  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||  | ||||||||||    
T  28371649 acatttttgagaaaactctatgtattccaaagcatgatgtcactctaatcatgactt 28371705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 345 - 463
Target Start/End: Complemental strand, 23540099 - 23539981
Alignment:
Q  345 taagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctgg 444  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  23540099 taagtccaacatctcgtcgaaactcctttgattgaagaaaagacttcaaatactgcaagagtaaaagtcaactaatattgaccacattaaatgaggctgg 23540000  T
Q  445 tgaaaataccagctaacaa 463  Q
    ||| ||||| |||||||||    
T  23539999 tgacaatacgagctaacaa 23539981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 23540351 - 23540219
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 198  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |  |||||||||||| | |||||||||| |||||||    
T  23540351 tgcattaaaaataaaggtggttcgaaaaatcttttacatacattctttatgattcttttctcttgagccggtactttgagtattttagaattctgtatag 23540252  T
Q  199 gtgatttgcgacccgtttt-tctatggaaaact 230  Q
    ||||||||| |||||||||  ||||||||||||    
T  23540251 gtgatttgcaacccgttttccctatggaaaact 23540219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 10660970 - 10661095
Alignment:
Q  11 ggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaat 110  Q
    ||||||||| |||||||||  ||||||||||||||||| ||| ||||||||||||||||||| ||  |||||||||||| |||  ||||||||| |||||    
T  10660970 ggcgtctttggacagaaaag-ggttttaaaagcaaagtaaagacattaagtttaaattgcaggaagttaaaggaaaggtgaaacgcaatgcattcaaaat 10661068  T
Q  111 aaaggtggttcgacaaatcctttacat 137  Q
    |||||||||||||||||||||||||||    
T  10661069 aaaggtggttcgacaaatcctttacat 10661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 9286498 - 9286326
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| ||||||||| ||||  |||| |||| | || |||||||||||||||||| ||||||||||||||||||||||||| | ||| ||| ||||    
T  9286498 aagttaaaagtgcagaaacttaaaaaaaagataaattgcattgcattaaaaataaaggtagttcgacaaatcctttacatacattttgtataactatttt 9286399  T
Q  158 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 230  Q
    ||||||| ||||||||| || |||| ||||| ||| |||| |||||||||||||||||||  ||||||||||||    
T  9286398 ctctcgcaccggtacttcgagtgttgtagaa-tttctatatgtgatttgcgacccgttttccctatggaaaact 9286326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 16600591 - 16600725
Alignment:
Q  96 caatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgta 195  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||| | ||| ||||| ||||||||| ||||||||| || |||| ||||| ||| ||    
T  16600591 caatgcattaaaaataaatgtggttcgacaaatcctttacgtacattatgtataactctattctctcgcgccggtacttcgagtgttgtagaa-tttcta 16600689  T
Q  196 taggtgatttgcgacccgttttt-ctatggaaaact 230  Q
    || ||||||||| |||||||||| ||||||||||||    
T  16600690 taagtgatttgcaacccgtttttcctatggaaaact 16600725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 130 - 292
Target Start/End: Original strand, 10661748 - 10661911
Alignment:
Q  130 ctttacatacattctttatgactcttttctctcgctccggtactttga-atgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaa 227  Q
    |||||||||||||||||||||||||||| | |||| ||||||| |||| |  |||||||||| |||||||||||||||||||| |||||  | |||||||    
T  10661748 ctttacatacattctttatgactcttttttatcgcaccggtacattgagagtttttagaattctgtataggtgatttgcgacctgttttcccaatggaaa 10661847  T
Q  228 actcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccat 292  Q
    ||||||||| ||||| ||| |  ||  ||||||||||| |||||||| |||| |||| |||||||    
T  10661848 actcttatttatacatagaaaacaa-ctggaaagaaactaatcccacgatcaacactccttccat 10661911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 13110204 - 13110345
Alignment:
Q  69 gcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccg 168  Q
    |||||||| ||||| |||| |||| | || ||||||||||||||||||||||| ||||||| | |||||| ||| | ||| ||||||||||||| | |||    
T  13110204 gcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcaacaaatcatatacatatattttgtataactcttttctctctcgccg 13110303  T
Q  169 gtactttgaatgttttagaattttgtataggtgatttgcgacc 211  Q
    |||||| || |||| ||||| ||| |||| |||||||||||||    
T  13110304 gtacttcgagtgttgtagaa-tttctataagtgatttgcgacc 13110345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 382 - 460
Target Start/End: Original strand, 10662109 - 10662187
Alignment:
Q  382 aaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaa 460  Q
    |||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| || |||||||    
T  10662109 aaaagacttcgagtcctgcaagagtaaaagtcaactaatgttgaccacattaaatgagtctggtgaaattatcagctaa 10662187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 26136242 - 26136195
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacattcttt 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26136242 tgcattaaaaataaaggtggtccgacaaatcctttacatacattcttt 26136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 18672261 - 18672125
Alignment:
Q  69 gcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccg 168  Q
    |||||||| | ||| |||| |||| |||| ||||||||||||||||||   || ||||||| |||||||||||| | ||| ||||||||||||| | ||     
T  18672261 gcagaaacttcaagaaaagataaattacattgcattaaaaataaaggt---tcaacaaatcatttacatacattttgtataactcttttctctctcgcca 18672165  T
Q  169 gtactttgaatgttttagaattttgtataggtgatttgcga 209  Q
    |||||| || |||| ||||| ||| |||| |||||||||||    
T  18672164 gtacttcgagtgttgtagaa-tttctataagtgatttgcga 18672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 22713767 - 22713661
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| || |||||| ||||| |||| |||  |||| |||||||||||||||||||||| ||||||| ||||||||| ||||| ||| | ||||||    
T  22713767 aagttaaaagtgtagaaacttaaagaaaagataatttacattgcattaaaaataaaggtggtttgacaaattctttacatatattctatataaatctttt 22713668  T
Q  158 ctctcgc 164  Q
    || ||||    
T  22713667 ctatcgc 22713661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 24577408 - 24577344
Alignment:
Q  166 ccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaact 230  Q
    ||||||||| || |||||||||||| |||||||||||||||| ||||||||| ||||| ||||||    
T  24577408 ccggtacttcgattgttttagaattctgtataggtgatttgccacccgttttcctatgaaaaact 24577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 382 - 559
Target Start/End: Original strand, 16600980 - 16601159
Alignment:
Q  382 aaaagacttcaattcctgcaagagtaaaaa-tcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaat 480  Q
    |||| ||||||||||||||||   |||||| ||||| |||||||||  ||||||||||| ||| ||||| |||  ||||| |||||| ||| ||| ||||    
T  16600980 aaaatacttcaattcctgcaaagataaaaagtcaactaatgttgactgcattaaatgagtctgttgaaattacaggctaataaattg-ccctcaaaaaat 16601078  T
Q  481 gccattttcgacggaatata-atcaacggagagaattgacatttttgagaaaacg--ctaagtatttcaaagcatgatgtca 559  Q
    | |||||||||| ||| | |  || | |||| |||||||||||||||| ||||||  | ||| |||||||||||||||||||    
T  16601079 gtcattttcgactgaaaaaatttcgaaggagggaattgacatttttga-aaaacgtcccaagcatttcaaagcatgatgtca 16601159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 25095052 - 25095187
Alignment:
Q  73 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt-acatacattctttatgactcttttctctcgctccggta 171  Q
    |||| ||||| |||| |||| | || |||||| | |||||||||||||||||||||  ||| ||||||||  | ||| |||||||| |||||| ||||||    
T  25095052 aaacttaaagaaaagataaattgcattgcatttataataaaggtggttcgacaaataattttacatacatcatgtataactcttttatctcgcgccggta 25095151  T
Q  172 ctttgaatgttttagaattttgtataggtgatttgcg 208  Q
    ||| |  |||||||||| ||| |||| ||||||||||    
T  25095152 cttcgggtgttttagaa-tttctataagtgatttgcg 25095187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 27123752 - 27123582
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttt 156  Q
    |||||||||  ||| |||| |||||||| | |||| | || |||||||||| |||||||||||||| |||||   ||||||||||| | ||| |||||||    
T  27123752 aagtttaaaacgcataaacttaaaggaatgataaattgcattgcattaaaa-taaaggtggttcgataaatcagattacatacattatgtataactcttt 27123654  T
Q  157 tctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaact 230  Q
    ||||||||  ||||||  ||| |||| ||||| ||| ||||  ||||||||||| | ||||| ||||||||||||    
T  27123653 tctctcgcatcggtac--tgagtgttgtagaa-tttctataattgatttgcgactcatttttcctatggaaaact 27123582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 15340983 - 15340931
Alignment:
Q  110 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 161  Q
    ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||    
T  15340983 taaaggtggtttgacaaatcagtttacatacattctgtatgactcttttctct 15340931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 15430048 - 15429996
Alignment:
Q  110 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 161  Q
    ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||    
T  15430048 taaaggtggtttgacaaatcagtttacatacattctgtatgactcttttctct 15429996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 15521352 - 15521300
Alignment:
Q  110 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 161  Q
    ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||    
T  15521352 taaaggtggtttgacaaatcagtttacatacattctgtatgactcttttctct 15521300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 41652073 - 41652021
Alignment:
Q  110 taaaggtggttcgacaaatcct-ttacatacattctttatgactcttttctct 161  Q
    ||||||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  41652073 taaaggtggttcgacaaatcaaattacatacattctgtatgactcttttctct 41652021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 9006930 - 9006976
Alignment:
Q  73 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggt 119  Q
    |||| |||||||||||||||||  | |||||||||||||||||||||    
T  9006930 aaacttaaaggaaaggtaaaatgtattgcattaaaaataaaggtggt 9006976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 1e-90; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 18929235 - 18929543
Alignment:
Q  6 cctgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcatta 105  Q
    |||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18929235 cctgtggcgtatttcgacataaaa-aggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatgcatta 18929333  T
Q  106 aaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgattt 205  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||| | ||||||||| || |||||||||||| | ||||||||||||    
T  18929334 aaaataaaggtggttcgataaatcttttacatacattctttatgactatcttctctcacgccggtacttcgagtgttttagaattctatataggtgattt 18929433  T
Q  206 gcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgc 304  Q
    || |||| ||||  || |||||||||  |||| || || ||| | ||| |||||||||||| |||||||| |||| |||| ||||||||||||||| |||    
T  18929434 gcaacccattttccctttggaaaactactatttatgcatagaaaataacttggaaagaaactaatcccacgatcaacactccttccatgtagacaaccgc 18929533  T
Q  305 ttgtctccca 314  Q
    ||||||||||    
T  18929534 ttgtctccca 18929543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 26650839 - 26651133
Alignment:
Q  8 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaa 106  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||     
T  26650839 tgtggcttctttcgacagaaaaaagggttttaaaagcaaagtaaagacatgaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatggattat 26650938  T
Q  107 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||| || |||||||||||| |||||||||||||||    
T  26650939 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtgcttcgagtgttttagaattctgtataggtgatttg 26651038  T
Q  207 cgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaa 300  Q
    ||||| |||||  |||||||||||||||||| ||||| ||| |   |  | ||||||||| |||||||| || ||||||  ||||||||||||||    
T  26651039 cgacctgttttccctatggaaaactcttatttatacatagaaaaataactagaaagaaaccaatcccacgattagcactcattccatgtagacaa 26651133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 318 - 555
Target Start/End: Original strand, 18929651 - 18929887
Alignment:
Q  318 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaacc 417  Q
    |||||||| ||||||||||||  ||||||||||||| ||||  | ||||||||||| ||||| ||||| |||||||||||||||||||||||| |||||     
T  18929651 ctttaaggattcgagactttttcatgctaagtccaaaatcttgtcgaaactcctttaattgaggaaaatacttcaattcctgcaagagtaaaagtcaact 18929750  T
Q  418 aatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattg 517  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||| |||||||||| ||||||| |||| |||||||||||    
T  18929751 aatgttcaccacattaaatgaggttggtgaaaataccagctaacaaatttcccctcaa-aaatgtcattttcgactgaatatattcaaaggagagaattg 18929849  T
Q  518 acatttttgagaaaacgctaagtatttcaaagcatgat 555  Q
    |||||||||||||||| |||||||||||||||||||||    
T  18929850 acatttttgagaaaactctaagtatttcaaagcatgat 18929887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 17402729 - 17402932
Alignment:
Q  14 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaa 113  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||    
T  17402729 gtctttcaacaaaaaaaaggttttaaaagcaaagtaaaggcaataagtttaaattgcagaaacttaaaggaaatataaaatacaatgcattaaaaataaa 17402828  T
Q  114 ggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccg 213  Q
    |||||||  |||||||||||||||||||||||||| ||| ||||||||||  ||||||||| || |||||||||||| | |||||||||||||||||| |    
T  17402829 ggtggttatacaaatcctttacatacattctttataacttttttctctcgtgccggtacttagagtgttttagaattctatataggtgatttgcgacctg 17402928  T
Q  214 tttt 217  Q
    ||||    
T  17402929 tttt 17402932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 25520601 - 25520385
Alignment:
Q  27 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaa 126  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||  ||||| |||| |||| |||| ||||||||||||||||| ||||||||||    
T  25520601 aaaaaggttttaaaagcaaagtaaaggcattaagttaaaattgcagaaagttaaagaaaagataaactacattgcattaaaaataaaggaggttcgacaa 25520502  T
Q  127 atcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatgga 225  Q
    | |||||||||||||| | ||||||||||||||||||| |||  |||| || ||||||| |||| |||||||||||||||| |||||||||  |||||||    
T  25520501 aacctttacatacattatgtatgactcttttctctcgcgccgtcacttcgagtgttttataattctgtataggtgatttgcaacccgttttccctatgga 25520402  T
Q  226 aaactcttattaataca 242  Q
    ||||| ||||| |||||    
T  25520401 aaactattatttataca 25520385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 58 - 217
Target Start/End: Complemental strand, 31404205 - 31404046
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt-acatacattctttatgactcttt 156  Q
    ||||||||| ||||||||| ||||| ||||||||| | || ||||||||||  ||||||||||||||||||| ||| ||||||||||| ||| |||||||    
T  31404205 aagtttaaaatgcagaaacttaaagaaaaggtaaattgcattgcattaaaataaaaggtggttcgacaaatcattttacatacattctgtataactcttt 31404106  T
Q  157 tctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt 217  Q
    |||||||| ||||||||| || |||||||||| |||  ||| |||||||||||||| ||||    
T  31404105 tctctcgcgccggtacttcgagtgttttagaa-tttcaataagtgatttgcgacccatttt 31404046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 379 - 559
Target Start/End: Original strand, 17403198 - 17403377
Alignment:
Q  379 aagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaa 478  Q
    ||||||||||||||||| ||||||  |||||| | ||| |||||||||||||||||||||||||||| ||| |||||||||| ||||| |||   || ||    
T  17403198 aagaaaagacttcaattgctgcaaaggtaaaagttaactaatgttgaccacattaaatgaggctggtaaaattaccagctaaaaaatttcccaaaaaaaa 17403297  T
Q  479 atgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatgtca 559  Q
    |||||||||| |||  || ||  || | |||||  |||||||||||| || |||| |||||||||||||||||||||||||    
T  17403298 atgccatttttgactaaagattttcgaaggagaagattgacatttttcag-aaactctaagtatttcaaagcatgatgtca 17403377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 343 - 462
Target Start/End: Original strand, 26651281 - 26651400
Alignment:
Q  343 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 442  Q
    |||||||||||||| || ||||||||||||   |||||||||| ||||| ||| |||||||||||||| ||||| ||| |||||||||||||||||||||    
T  26651281 gctaagtccaacatatcgttgaaactccttaagttgaagaaaaaacttcgatttctgcaagagtaaaagtcaactaatattgaccacattaaatgaggct 26651380  T
Q  443 ggtgaaaataccagctaaca 462  Q
    ||||||| |||| |||||||    
T  26651381 ggtgaaattacctgctaaca 26651400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 179 - 314
Target Start/End: Original strand, 19878981 - 19879117
Alignment:
Q  179 tgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaat 277  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||  |||| ||| | ||| |||||||||||| |||||||| ||    
T  19878981 tgttttagaattctgtataggtgatttgcgacccgtttttcctatggaaaactactatttttacatagaaaataagttggaaagaaactaatcccacgat 19879080  T
Q  278 cagcactacttccatgtagacaaacgcttgtctccca 314  Q
    || |||| ||  ||||| |||||||||||||||||||    
T  19879081 caacactcctctcatgttgacaaacgcttgtctccca 19879117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 58 - 314
Target Start/End: Original strand, 24543870 - 24544126
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| |||||||| |||| |  ||||||  |||| | || ||||||||||||||||||||||| | |||||||||||||| ||| | ||| | ||||||    
T  24543870 aagttaaaattgcaaaaacttgtaggaaaaataaattgcattgcattaaaaataaaggtggttccagaaatcctttacatatattatgtataaatctttt 24543969  T
Q  158 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttattaatacaaag-atactaattt 255  Q
    ||||||| ||| ||||| || |||| |  || ||| |||| |||||||| ||||||||||| ||||||||||||  |||| ||||| || | | |||  |    
T  24543970 ctctcgcgccgatacttcgagtgttgt-caaatttctataagtgatttgtgacccgtttttcctatggaaaactactatttatacatagtaaaataa-ct 24544067  T
Q  256 ggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    ||||| || | ||  |||| ||||||||| |||||||||| || | |||||||||||||    
T  24544068 ggaaaaaacctaactccacgatcagcacttcttccatgtaaactaccgcttgtctccca 24544126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1082 - 1151
Target Start/End: Original strand, 17403898 - 17403967
Alignment:
Q  1082 ccaagatttggaaatctcatgtacttattccatactctgtctctggtactgttcacgccttcctagggcc 1151  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||  |||||||    
T  17403898 ccaagatttagaaatctcaggtactcattccatactctgtctctggtactgtttacgcctttatagggcc 17403967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 20478379 - 20478255
Alignment:
Q  91 aaatacaatgcattaaaaataaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaat 189  Q
    |||| |||| |||||||| |||||||||| | |||||||  |||||||||||||| ||| |||| |||| ||||| |||||| ||||| |||| ||||||    
T  20478379 aaatgcaattcattaaaattaaaggtggt-ctacaaatcagtttacatacattctgtataactcgtttccctcgcgccggtagtttgagtgttgtagaat 20478281  T
Q  190 tttgtataggtgatttgcgacccgtttt 217  Q
    | ||||||  ||||||||||||| ||||    
T  20478280 tatgtata--tgatttgcgacccatttt 20478255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 407 - 527
Target Start/End: Complemental strand, 25520118 - 25519999
Alignment:
Q  407 aaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaac 506  Q
    |||| ||||| |||||||||  ||||||||  | ||  |||||||||   ||||||||||||| ||||| |||||||||||||||| |||||||||| |     
T  25520118 aaaagtcaactaatgttgactgcattaaattggccttttgaaaatacagcctaacaaattgccacccaa-aaatgccattttcgactgaatataatcgaa 25520020  T
Q  507 ggagagaattgacatttttga 527  Q
    ||||| ||||| |||||||||    
T  25520019 ggagataattggcatttttga 25519999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 29891376 - 29891263
Alignment:
Q  106 aaaataaaggtggttcgacaaatcctt-tacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatt 204  Q
    |||||||| ||||||||||| |||  | |||||||||| | ||| | ||||||||||||| ||| |||||||| ||||||| || ||| |||| |||||     
T  29891376 aaaataaatgtggttcgacatatcagtgtacatacattttgtataaatcttttctctcgcgccgatactttgagtgttttataa-tttctataagtgatc 29891278  T
Q  205 tgcgacccgtttttc 219  Q
    |||||||||||||||    
T  29891277 tgcgacccgtttttc 29891263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 28760724 - 28760672
Alignment:
Q  110 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 161  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  28760724 taaaggtggttcgacaaatcagtttacatacattctatatgactcttttctct 28760672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 17162101 - 17162015
Alignment:
Q  73 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttttct 159  Q
    |||| ||||||||||||||| | || |||||||| | ||||||||| ||||||||||   ||||||||||||| ||||| ||||||||    
T  17162101 aaacttaaaggaaaggtaaattgcattgcattaata-taaaggtggctcgacaaatcagattacatacattctgtatgattcttttct 17162015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 17636690 - 17636791
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatc-ctttacatacattctttatgactcttt 156  Q
    |||||||||  |||||||| ||||| ||||||||| | |  ||||||||   ||||||||||||||||||||   ||||||||||| | |||||||||||    
T  17636690 aagtttaaaacgcagaaacttaaagaaaaggtaaattgccttgcattaatg-taaaggtggttcgacaaatcagattacatacattttgtatgactcttt 17636788  T
Q  157 tct 159  Q
    |||    
T  17636789 tct 17636791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 3e-85; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 34 - 301
Target Start/End: Complemental strand, 19218177 - 19217911
Alignment:
Q  34 ttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt 133  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19218177 ttttaaaagcaaagtaaaggcattaagtttaaattgtagaaacttaaaggaaatgtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt 19218078  T
Q  134 acatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactct 232  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||  |    
T  19218077 acatacattctttatggctcttttctctcgcgccggtactttgagtgttttagaa-tttgtataggtgatttgcgacccgttttccctatggaaaacagt 19217979  T
Q  233 tattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaa 301  Q
    |||| ||||| | | | |||  ||||||||||| |||||||| | ||||||| ||| ||||||||||||    
T  19217978 tatttatacataaaaaataa-ctggaaagaaactaatcccacgaccagcactcctttcatgtagacaaa 19217911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 48 - 306
Target Start/End: Complemental strand, 20064653 - 20064388
Alignment:
Q  48 ttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacataca 140  Q
    |||| |||||||||||||||||||||||| ||||| ||||  |||||| ||       ||||||||||||||||||||||| ||||||| ||||||||||    
T  20064653 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatataaatgcaagtgcattaaaaataaaggtggttcaacaaatcatttacataca 20064554  T
Q  141 ttctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttattaat 239  Q
    || ||||| |||||||||||| || |||||||||| | |||||||||||| |||||||| |||||||||||||||||  |||||||||||| ||||| ||    
T  20064553 ttttttataactcttttctcttgcaccggtactttcagtgttttagaattctgtataggcgatttgcgacccgttttccctatggaaaactattatttat 20064454  T
Q  240 acaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgctt 306  Q
    ||| ||  | |||  ||||||||||| |||||||||||||||||  ||||||||||||||| |||||    
T  20064453 acatagtaaataa-gtggaaagaaactaatcccacaatcagcacaccttccatgtagacaaccgctt 20064388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 48 - 314
Target Start/End: Original strand, 20060802 - 20061075
Alignment:
Q  48 ttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacataca 140  Q
    |||| |||||||||||||||||||||||| ||||| ||||  |||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  20060802 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataaaggtggttcgacaaatcctttacataca 20060901  T
Q  141 ttctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgt-ttttctatggaaaactcttattaat 239  Q
    || |||||||||||||||||| || |||||| ||  |||||||||||||| |||||||| ||||||| |||||| |   |||||||||||| | ||| ||    
T  20060902 ttgtttatgactcttttctcttgcgccggtagttcaaatgttttagaattctgtataggcgatttgcaacccgtctaccctatggaaaactatcatttat 20061001  T
Q  240 acaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    ||| ||  | ||| || ||||||||| |||||||| |||| ||||  || |||||| |||| |||||||||||||    
T  20061002 acataggaagtaagtt-gaaagaaactaatcccacgatcatcactcattacatgtacacaatcgcttgtctccca 20061075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 99 - 314
Target Start/End: Original strand, 20713228 - 20713443
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 198  Q
    |||||||||||||||||| |||| |||||||  |||||||||||||||||||||||||||||| ||  ||||| || || |||||||||||| ||||||     
T  20713228 tgcattaaaaataaaggttgttcaacaaatctgttacatacattctttatgactcttttctcttgcatcggtatttcgagtgttttagaattctgtatat 20713327  T
Q  199 gtgatttgcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 297  Q
    | |||||||||||||||||  |||||||||||| ||||| ||||| ||  | ||| || ||||||||| |||||||| ||||||||| ||||||||||||    
T  20713328 gcgatttgcgacccgttttccctatggaaaactattatttatacataggaaataagtt-gaaagaaactaatcccacgatcagcactccttccatgtaga 20713426  T
Q  298 caaacgcttgtctccca 314  Q
    ||| |||||||||||||    
T  20713427 caaccgcttgtctccca 20713443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 99 - 315
Target Start/End: Complemental strand, 23210240 - 23210024
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 198  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| || |||||||||||| ||||||     
T  23210240 tgcattaaaaataaaagtggttcgacaaatcctttacatacattctttaagactcttttctcttgcgccggtacttcgagtgttttagaattatgtatat 23210141  T
Q  199 gtgatttgcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 297  Q
      ||||||||||| |||||  |||||| ||||| ||||| ||||| ||  | |||  ||||||||||| |||||||| |||| |||| ||||||| ||||    
T  23210140 acgatttgcgacctgttttccctatgggaaactattatttatacataggaaataa-gtggaaagaaactaatcccacgatcaacactccttccatttaga 23210042  T
Q  298 caaacgcttgtctcccat 315  Q
    ||| ||||||||||||||    
T  23210041 caaccgcttgtctcccat 23210024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 20058824 - 20058550
Alignment:
Q  48 ttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacataca 140  Q
    |||| |||||||||||||||||||||||| ||||  |||   |||||||||       |||||||||||||||||||||||||||||| |||||||||||    
T  20058824 ttaatgcattaagtttaaattgcagaaacttaaataaaataaaaaatacaaatgcaattgcattaaaaataaaggtggttcgacaaattctttacataca 20058725  T
Q  141 ttctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttattaat 239  Q
    ||||||||||||||||||||| || |  ||||||||||||||||||||||||| ||||| ||||||| ||| || |  | ||||||||||| | ||| ||    
T  20058724 ttctttatgactcttttctcttgcgctagtactttgaatgttttagaattttgcataggcgatttgcaacctgtctaccttatggaaaactatcatttat 20058625  T
Q  240 acaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    ||| ||  | ||| | | ||| |||| |||||||| ||||||||| |||||||| | |||| |||||||||||||    
T  20058624 acataggaagtaagtggaaaaaaaactaatcccacgatcagcactccttccatgcaaacaaccgcttgtctccca 20058550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 325 - 532
Target Start/End: Complemental strand, 20064265 - 20064063
Alignment:
Q  325 gcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttg 424  Q
    |||||||||||||| |  |||| |||||||||||| | ||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||  ||||||    
T  20064265 gcttcgagactttttac-gctaggtccaacatctcgtcgaa-ctcttttgattgaagaaaagacttcgattcctgcaagagtaaaagtcaactgatgttg 20064168  T
Q  425 accacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttt 524  Q
    ||||||||||| |||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||  ||   || |||| |||||| |||||||||||    
T  20064167 accacattaaacgaggctggtgaaaataacagctaacaaattgtcccccaa-aaatgtcattttcgaatga--ctactcaaaggagaggattgacatttt 20064071  T
Q  525 tgagaaaa 532  Q
    || |||||    
T  20064070 tgggaaaa 20064063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 99 - 312
Target Start/End: Original strand, 25951315 - 25951528
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 198  Q
    |||||||| | ||||  |||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||||||| |||||||||||| ||||||     
T  25951315 tgcattaagagtaaaattggttcgacaaatcttttacatacattctttatgactcttttctctctgt-cggtactttgagtgttttagaattatgtataa 25951413  T
Q  199 gtgatttgcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 297  Q
    | ||||| ||||| |||||  |||||||||||| ||||| |||||  |  | ||| | | |||||||| |||| ||| |||| |||| ||||||||||||    
T  25951414 gcgatttacgacctgttttacctatggaaaactattatttatacatcggaaataagtggaaaagaaactaatctcacgatcaacactccttccatgtaga 25951513  T
Q  298 caaacgcttgtctcc 312  Q
    ||| |||||||||||    
T  25951514 caaccgcttgtctcc 25951528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 343 - 463
Target Start/End: Original strand, 25951664 - 25951783
Alignment:
Q  343 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 442  Q
    ||||| |||||||| || ||||| |||||||||||  |||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||||    
T  25951664 gctaaatccaacatttcgttgaa-ctcctttgattagagaaaagactttgattcgtgcaagagtaaaagtcaactaatgttgaccacattaaatgaggct 25951762  T
Q  443 ggtgaaaataccagctaacaa 463  Q
    |||||||||||||||||||||    
T  25951763 ggtgaaaataccagctaacaa 25951783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 343 - 462
Target Start/End: Complemental strand, 20058418 - 20058300
Alignment:
Q  343 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 442  Q
    |||| |||||||||||| | ||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||| |||  ||||||||||||||||||||    
T  20058418 gctaggtccaacatctcgtcgaa-ctcttttgattgaagaaaagacttcgattcctgcaagagtaaaagtcaactaatactgaccacattaaatgaggct 20058320  T
Q  443 ggtgaaaataccagctaaca 462  Q
    |||||||||| |||||||||    
T  20058319 ggtgaaaatatcagctaaca 20058300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 365 - 463
Target Start/End: Original strand, 21165557 - 21165655
Alignment:
Q  365 aactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaa 463  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||| |||||||||    
T  21165557 aactcctttgattgaaggaaagacttcgcttcctgcaagagtaaaagtcaactaatgttgaccacattaagtgaggctggtaaaaatactagctaacaa 21165655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 343 - 465
Target Start/End: Complemental strand, 23209893 - 23209772
Alignment:
Q  343 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 442  Q
    ||||| ||||||||||| | ||| |||||||| |||||||||| ||||| |||||||||||||||||| ||||| | ||||||||||||||| |||||||    
T  23209893 gctaaatccaacatctcgtcgaa-ctcctttgtttgaagaaaatacttcgattcctgcaagagtaaaagtcaactattgttgaccacattaattgaggct 23209795  T
Q  443 ggtgaaaataccagctaacaaat 465  Q
    |||| ||||| ||||||| ||||    
T  23209794 ggtgcaaataacagctaataaat 23209772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 23379474 - 23379373
Alignment:
Q  130 ctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaa 228  Q
    ||||||||||||||||||||||||||||||||||| |  |||||| || |||||||||||| || |||||||||||||||||||||||  ||||||||||    
T  23379474 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaa 23379375  T
Q  229 ct 230  Q
    ||    
T  23379374 ct 23379373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 58 - 217
Target Start/End: Complemental strand, 17167433 - 17167275
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| || |||||| ||||| |||| |||| | || | |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  17167433 aagttaaaagtgtagaaacttaaagaaaagataaattgcattacattaaaaataaaggtggttcgacaaatcctttacatacattttgtattactctttt 17167334  T
Q  158 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt 217  Q
    ||||||| | |||||||    |||| ||||| ||| |||| |||||||| ||||||||||    
T  17167333 ctctcgcgctggtacttctggtgttgtagaa-tttctataagtgatttgggacccgtttt 17167275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 19924128 - 19924022
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| |||| |||| ||||| |||| |||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||    
T  19924128 aagttaaaagtgcataaacttaaagaaaagataaattacattgcattaaaaataaaggtggttcgacaaatcttttatatacattctgtataactctttt 19924029  T
Q  158 ctctcgc 164  Q
    |||||||    
T  19924028 ctctcgc 19924022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 23355581 - 23355777
Alignment:
Q  10 tggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaa 109  Q
    ||||||| |||||  | ||||| |||||||| ||||||| |||| || ||||| ||||||||||||| ||||| |||| |||| | || ||||||||||     
T  23355581 tggcgtcattcgatgggaaaaacgttttaaatgcaaagtaaaggaataaagttaaaattgcagaaacataaagaaaagataaattgcattgcattaaaag 23355680  T
Q  110 taaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttg 206  Q
    ||||||||||  || ||||| |||||||| ||| | ||||||| ||||| ||  | |||||||||  | |||| ||||||| ||||||||| |||||    
T  23355681 taaaggtggtctgaaaaatcatttacatatattttgtatgactattttccctaacgccggtacttcaagtgttctagaattctgtataggtaatttg 23355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 24878356 - 24878489
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    |||||||||  |||||||| ||||| |||| |||| | || |||||||||||||||||||||| ||||||||||||||||| |||   ||| ||||||||    
T  24878356 aagtttaaaacgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggtttgacaaatcctttacataaattacgtataactctttt 24878455  T
Q  158 ctctcgctccggtactttgaatgttttagaattt 191  Q
    |||||||  ||||| || || |||| ||||||||    
T  24878456 ctctcgcgtcggtaattcgagtgttgtagaattt 24878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 343 - 462
Target Start/End: Original strand, 20061207 - 20061323
Alignment:
Q  343 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 442  Q
    ||||||||||||||||| | ||| | ||||| ||||||||||| ||||| |||||||||||||||||| ||||| |||| |||||| |||||| ||||||    
T  20061207 gctaagtccaacatctcgtcgaa-cacctttcattgaagaaaa-acttcgattcctgcaagagtaaaagtcaactaatggtgaccatattaaacgaggct 20061304  T
Q  443 ggtgaaaataccagctaaca 462  Q
    |||| |||||||||| ||||    
T  20061305 ggtg-aaataccagcaaaca 20061323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1084 - 1151
Target Start/End: Original strand, 24879513 - 24879580
Alignment:
Q  1084 aagatttggaaatctcatgtacttattccatactctgtctctggtactgttcacgccttcctagggcc 1151  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |||| ||||||||    
T  24879513 aagatttggaaatctcaggtactcattccatactctgtctctggtactgtttacacctttctagggcc 24879580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 19926855 - 19926749
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| |||| |||| ||||| |||| |||| | || ||||||||||||||||||||||||||||||| ||||  |||||||| ||| ||| ||||    
T  19926855 aagttaaaagtgcataaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgacaaatcttttatttacattctgtataactatttt 19926756  T
Q  158 ctctcgc 164  Q
    |||||||    
T  19926755 ctctcgc 19926749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 17987487 - 17987619
Alignment:
Q  79 aaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatc-ctttacatacattctttatgactcttttctctcg-ctccggtactttg 176  Q
    |||||||||||||||| || |||||||||||||||||||| || |||||||  | |||||||||||| ||| |||| |||| || | |  ||||| ||||    
T  17987487 aaaggaaaggtaaaatgcattgcattaaaaataaaggtgg-tctacaaatcagtctacatacattctgtataactcgtttccctagacgtcggtagtttg 17987585  T
Q  177 aatgttttagaattttgtataggtgatttgcgaccc 212  Q
    | |||||||||||| ||||||  |||||||||||||    
T  17987586 agtgttttagaattctgtata--tgatttgcgaccc 17987619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 19217771 - 19217727
Alignment:
Q  418 aatgttgaccacattaaatgaggctggtgaaaataccagctaaca 462  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  19217771 aatgttgaccacattaaatgaggctggtgaaattaccagctaaca 19217727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 343 - 416
Target Start/End: Original strand, 20713575 - 20713647
Alignment:
Q  343 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaac 416  Q
    ||||||||||| ||||| | ||| ||||||||||||||||||||||||  |||||||||||| ||||| |||||    
T  20713575 gctaagtccaatatctcgtcgaa-ctcctttgattgaagaaaagactttgattcctgcaagaataaaagtcaac 20713647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 381 - 489
Target Start/End: Original strand, 24878782 - 24878889
Alignment:
Q  381 gaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaat 480  Q
    ||||||||||| |||| |||||   ||||| ||||| |||||||||  ||||||||||| ||| ||||| |||  |||||||||||| ||||||| ||||    
T  24878782 gaaaagacttcgattcttgcaaagataaaagtcaactaatgttgactgcattaaatgagcctgttgaaattacaggctaacaaattgacccccaa-aaat 24878880  T
Q  481 gccattttc 489  Q
    | |||||||    
T  24878881 gtcattttc 24878889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 17987914 - 17987988
Alignment:
Q  418 aatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacg 493  Q
    ||||||||||| |||||||||| |||  |||| ||| |||||||||| |||||||||| |||| ||||||||||||    
T  17987914 aatgttgaccatattaaatgagcctgtcgaaattacaagctaacaaaatgccccccaa-aaatcccattttcgacg 17987988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 493
Target Start/End: Original strand, 22011479 - 22011588
Alignment:
Q  383 aaagacttcaattcctgcaagagtaaaaa-tcaaccaa-tgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaat 480  Q
    |||| |||| |||||||||| |||||||| |||||||| |||||||||||||||||||  ||| ||||| |||   |||||||| |||||||  | ||||    
T  22011479 aaagccttcgattcctgcaa-agtaaaaagtcaaccaaatgttgaccacattaaatgaatctgttgaaattacagactaacaaactgccccc--aaaaat 22011575  T
Q  481 gccattttcgacg 493  Q
    |||||||||||||    
T  22011576 gccattttcgacg 22011588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 24878288 - 24878319
Alignment:
Q  10 tggcgtctttcgacagaaaaaaggttttaaaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  24878288 tggcgtctttcgacagaaaaaaggttttaaaa 24878319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 31533102 - 31533052
Alignment:
Q  110 taaaggtggttcgacaaatcct-ttacatacattctttatgactcttttct 159  Q
    ||||||||||||||||||||   ||||||||||||| ||||||||||||||    
T  31533102 taaaggtggttcgacaaatcagattacatacattctctatgactcttttct 31533052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 4e-78; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 15686859 - 15687166
Alignment:
Q  8 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 107  Q
    |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15686859 tgtggcgtgtttcgatagaaaaagggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaagcaaaggtaaaatacaatgcattaaa 15686958  T
Q  108 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaat-gttttagaattttgtataggtgatttg 206  Q
    |||||||||||| | | |||||| || ||||||||||||| ||||||||||||||||  |||||||| || |  ||||||||||  ||||||||||||||    
T  15686959 aataaaggtggtcctaaaaatccatttcatacattctttaagactcttttctctcgcgtcggtacttcgagtatttttagaattcagtataggtgatttg 15687058  T
Q  207 cgacccgttt-ttctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgct 305  Q
    |||| |||||   |||||||||||||||||| ||||| ||| | |||  ||||||||||| |||||||| |||| |||| |||| |||||| ||| ||||    
T  15687059 cgactcgtttccactatggaaaactcttatttatacatagaaaataa-ctggaaagaaactaatcccacgatcatcactccttctatgtaggcaaccgct 15687157  T
Q  306 tgtctccca 314  Q
    |||||||||    
T  15687158 tgtctccca 15687166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 24699275 - 24699049
Alignment:
Q  15 tctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaag 114  Q
    |||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  24699275 tctttcgacagaaaaagggtttcataagcaaagtaaaggcattaagtttaaattgcataaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 24699176  T
Q  115 gtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgt 214  Q
    |||||||||||||||||||| ||||||||||  ||| ||||||||||||| ||||||||| || |||||||||||| |||||||| ||||||||||||||    
T  24699175 gtggttcgacaaatcctttaaatacattctt--tgattcttttctctcgcgccggtacttcgagtgttttagaattctgtataggggatttgcgacccgt 24699078  T
Q  215 ttt-tctatggaaaactcttattaataca 242  Q
    |||  |||||||||||| ||||| |||||    
T  24699077 tttccctatggaaaactattatttataca 24699049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 26010836 - 26011055
Alignment:
Q  14 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaa---ttgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaat 110  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||||||||    |||||||||| |||||||||| ||||||||||||| ||||||||    
T  26010836 gtctttcgacagaaaag-gtttttaaaagcaaagtaaaggcattaagtttaataacttgcagaaacttaaaggaaagataaaatacaatgctttaaaaat 26010934  T
Q  111 aaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgac 210  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| || ||||||||||||  ||||||||||||||||||    
T  26010935 aaaggtggttcgacaaatcatttacatacattctttatgactctattctctcgcgccggtacttcgagtgttttagaattcggtataggtgatttgcgac 26011034  T
Q  211 ccgtttt-tctatggaaaact 230  Q
    | |||||  ||||||||||||    
T  26011035 ctgttttccctatggaaaact 26011055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 13428914 - 13428733
Alignment:
Q  27 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaa 126  Q
    |||| ||||||||||||||||| || |||||||||||||||||||||||  |||||||||| |||||||||||||||||| |||||| ||||||| ||||    
T  13428914 aaaagggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaatttaaaggaaagataaaatacaatgcattaataataaatgtggttcaacaa 13428815  T
Q  127 atcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgac 210  Q
    |||||||||||||||||||||| ||||||||||||| |  |||||||| || ||||||||||  || |||||||||||||||||    
T  13428814 atcctttacatacattctttattactcttttctctcacgtcggtacttcgagtgttttagaa--ttatataggtgatttgcgac 13428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 382 - 560
Target Start/End: Complemental strand, 9033225 - 9033046
Alignment:
Q  382 aaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaatt--gccccccaagaaa 479  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  | ||||||| |||    
T  9033225 aaaagacttcaattcctgcaagagtaaaagtcaactaatgttgaccatattaaatgaggctggtgaaaataccagctaacaaattgggacccccaa-aaa 9033127  T
Q  480 tgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatgtcac 560  Q
    ||||||||||||| |||||||||||| |||| |||||| |||||||| |||||    ||||||| ||||||||||||||||    
T  9033126 tgccattttcgactgaatataatcaaaggagggaattggcatttttgggaaaaattaaagtattccaaagcatgatgtcac 9033046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 4765916 - 4765605
Alignment:
Q  10 tggcgtctttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 107  Q
    |||||||||||||||  |||| |||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||||||  |||| ||||||||||||||    
T  4765916 tggcgtctttcgacatgaaaagggtttttaaaagcaaagtaaaggcattaagtttaaaattgcataaacttaaaggaaaaataaagtacaatgcattaaa 4765817  T
Q  108 aataaaggtggttcgacaaatcctttacatac----attctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgat 203  Q
    | |||||||||||||||||||| |||||||||    ||||||||||||||||||||||||| |  |||| |  | |||||||||||  | ||||||||||    
T  4765816 agtaaaggtggttcgacaaatcatttacatacattaattctttatgactcttttctctcgcgctagtacatcaagtgttttagaatactatataggtgat 4765717  T
Q  204 ttgcgacccgttttt-ctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaac 302  Q
    ||||||||| ||||| ||||||||||||  |||| ||||| ||| | ||| | | | |   || |||||||| |||  |||| |||||||||||||||      
T  4765716 ttgcgacccatttttcctatggaaaactactatttatacatagaaaataactagaacaagtac-aatcccacgatctacacttcttccatgtagacaact 4765618  T
Q  303 gcttgtctcccat 315  Q
    |||||||||||||    
T  4765617 gcttgtctcccat 4765605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 4769742 - 4769937
Alignment:
Q  35 tttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttta 134  Q
    |||||||||||||| ||||||||||||||||||| || |||| ||||||||||   ||||||||||||||| ||||||||||||||||| |||| | |||    
T  4769742 tttaaaagcaaagtaaaggcattaagtttaaatttcataaacttaaaggaaagaataaatacaatgcattagaaataaaggtggttcgaaaaattcgtta 4769841  T
Q  135 catacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaact 230  Q
    ||||||||||||||||||||||||||| || | |||| || || |||||||||||| ||||||| ||||||| ||| | |||  ||||||||||||    
T  4769842 catacattctttatgactcttttctcttgcgctggtatttcgagtgttttagaattatgtatagatgatttgggacgcttttccctatggaaaact 4769937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 99 - 314
Target Start/End: Original strand, 7148790 - 7149005
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 198  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  | | |||||||||| |||||||    
T  7148790 tgcattaaaagtaaaagtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtacttcaactattttagaattctgtatag 7148889  T
Q  199 gtgatttgcgaccc-gtttttctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 297  Q
    |  ||||| ||||| ||||| ||||||||||||  |||| ||||| ||  | ||| |||||||||||| |||||||| |||| |||| ||||||||||||    
T  7148890 gcaatttgtgacccggttttcctatggaaaactactatttatacataggaaataa-ttggaaagaaactaatcccacgatcaacactccttccatgtaga 7148988  T
Q  298 caaacgcttgtctccca 314  Q
    ||| | |||||||||||    
T  7148989 caaccacttgtctccca 7149005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 4832740 - 4832516
Alignment:
Q  8 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaa 106  Q
    |||| |||||||||| |||||||||| |||| ||||||| || ||| |||||||||||||||||| ||||  ||||||||  ||||||||||||||||||    
T  4832740 tgtgacgtctttcgaaagaaaaaagggtttttaaagcaaggtaaagacattaagtttaaattgcataaactcaaaggaaaattaaaatacaatgcattaa 4832641  T
Q  107 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttg 206  Q
    | ||||||||||| |  || |||||||| ||| ||||||| ||||||||||||||| | ||  | ||| || |||||||||||| |||||||||||||||    
T  4832640 atataaaggtggtccagcagatcctttaaatatattctttgtgactcttttctctcacaccaatgcttcgagtgttttagaattctgtataggtgatttg 4832541  T
Q  207 cgacccgtttt-tctatggaaaact 230  Q
    ||| || ||||  ||||||||||||    
T  4832540 cgatccattttccctatggaaaact 4832516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 91 - 314
Target Start/End: Complemental strand, 9033622 - 9033398
Alignment:
Q  91 aaatacaa-tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgtttt-agaa 188  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||  |||||||| || ||| ||||| || |||||| | ||    
T  9033622 aaatacaagtgcattaaaaataaaggtggtttgacaaatcctttacatacattctttgtgaccattttctcttgcgccgatacttcgagtgttttgaaaa 9033523  T
Q  189 ttttgtataggtgatttgcgacccgtttttctatggaaaactcttattaataca-aagatactaatttggaaagaaacgaatcccacaatcagcactact 287  Q
    || |||||||| ||| ||||||||||||| |||||||||||| ||||| ||||| |||| | |||  ||||||||||| |||| ||| |||| |||| |     
T  9033522 ttctgtataggcgatatgcgacccgttttcctatggaaaactattatttatacataaga-aataa-gtggaaagaaactaatcacacgatcaacactccc 9033425  T
Q  288 tccatgtagacaaacgcttgtctccca 314  Q
    ||||||||||||| ||||||| |||||    
T  9033424 tccatgtagacaaccgcttgtatccca 9033398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 102 - 314
Target Start/End: Complemental strand, 29614724 - 29614512
Alignment:
Q  102 attaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgtt-ttagaattttgtataggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |   |||||||| || |||| |||||||| | ||||||     
T  29614724 attaaaaataaaggtggttcgacaaatcctttacatacattatttatgactcttttctcttgtgtcggtacttcgagtgttcttagaattatatataggc 29614625  T
Q  201 gatttgcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagaca 299  Q
    |||||||||||| ||||  |||||||||||| || || ||||| ||  | |||  || |||||||| |||||||||||||||||| ||||||||||||||    
T  29614624 gatttgcgacccattttccctatggaaaactatt-tttatacataggaaataa-atgaaaagaaactaatcccacaatcagcactccttccatgtagaca 29614527  T
Q  300 aacgcttgtctccca 314  Q
    |  ||||||| ||||    
T  29614526 actgcttgtcgccca 29614512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 341 - 530
Target Start/End: Complemental strand, 4765475 - 4765286
Alignment:
Q  341 atgctaagtccaacatctctttgaaactcctttgattgaag-aaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgag 439  Q
    |||||||||||||||| || | ||||||||||   |||||| |||| ||||| |||||||||||||||||| ||||| |||||||| |||||||||||||    
T  4765475 atgctaagtccaacatttcgtcgaaactccttaagttgaaggaaaaaacttcgattcctgcaagagtaaaagtcaactaatgttgatcacattaaatgag 4765376  T
Q  440 gctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttgagaa 530  Q
    |||||||||||| ||| |||||||||| | |||||| |||||||||||||||| ||| | | |  | |||||||||||  |||||||||||    
T  4765375 gctggtgaaaattccaactaacaaattacaccccaa-aaatgccattttcgactgaacaaattagaaggagagaattggtatttttgagaa 4765286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 64 - 206
Target Start/End: Original strand, 23378488 - 23378631
Alignment:
Q  64 aaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcga-caaatcctttacatacattctttatgactcttttctctc 162  Q
    |||||| |||||| |||||||||| |||| | || ||||||||||||||||||||||| | ||||||||||||||||||| | |||||||||||||||||    
T  23378488 aaattgtagaaacttaaaggaaagataaattgcattgcattaaaaataaaggtggttcaaacaaatcctttacatacattatgtatgactcttttctctc 23378587  T
Q  163 gctccggtactttgaatgttttagaattttgtataggtgatttg 206  Q
    || ||| ||||| || | ||||||||||||||||| ||||||||    
T  23378588 gcgccgatacttcgagtattttagaattttgtataagtgatttg 23378631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 346 - 559
Target Start/End: Original strand, 4770096 - 4770307
Alignment:
Q  346 aagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggt 445  Q
    |||||||||||||| |  ||| |||||   |||||||||||||| | |||||||||||  ||||| | ||| ||||||| |||||||||| ||| ||| |    
T  4770096 aagtccaacatctcgtcaaaattccttatgttgaagaaaagactacgattcctgcaaggataaaagtaaacgaatgttggccacattaaacgagtctgtt 4770195  T
Q  446 gaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttc 545  Q
     ||| ||||||||||||| || ||||||  ||||||||||||||||| |||| || || | ||||||||||| ||||||| || |||| |||||||||||    
T  4770196 aaaattaccagctaacaatttacccccc-tgaaatgccattttcgactgaatctattcgaaggagagaattggcattttttag-aaactctaagtatttc 4770293  T
Q  546 aaagcatgatgtca 559  Q
    ||||||||||||||    
T  4770294 aaagcatgatgtca 4770307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 16243069 - 16242937
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 198  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||| || |||||||||||  |||| ||    
T  16243069 tgcattaaaaataaaagtggttcgacaaatgctttacatacattctttatgactcttttctctcgcgttggtacttcgagtgttttagaatcctgtagag 16242970  T
Q  199 gtgatttgcgacccgtttt-tctatggaaaact 230  Q
    |  |||| |||| ||||||  ||||||||||||    
T  16242969 gaaatttacgactcgttttccctatggaaaact 16242937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 343 - 461
Target Start/End: Complemental strand, 24698845 - 24698727
Alignment:
Q  343 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 442  Q
    |||||||| |||||||| | ||||||||||   ||||||||||||||||||||||| ||| ||||||| ||||| ||||||||| | ||||||||||| |    
T  24698845 gctaagtctaacatctcgtcgaaactccttatgttgaagaaaagacttcaattcctccaatagtaaaagtcaactaatgttgactaaattaaatgaggtt 24698746  T
Q  443 ggtgaaaataccagctaac 461  Q
    ||||||| || ||||||||    
T  24698745 ggtgaaattatcagctaac 24698727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 382 - 462
Target Start/End: Original strand, 15687340 - 15687420
Alignment:
Q  382 aaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaaca 462  Q
    |||||||||  |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  15687340 aaaagactttgattcctacaagagtaaaagtcaactaatgttgaccacattaaatgaggctggtgaacttaccagctaaca 15687420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 367 - 460
Target Start/End: Complemental strand, 16242699 - 16242605
Alignment:
Q  367 ctcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatc-aaccaatgttgaccacattaaatgaggctggtgaaaataccagctaa 460  Q
    ||||||||||||| |||||||||||  ||||||||| ||||| | || ||| ||||||||||||||||||||||| || ||||||||||||||||    
T  16242699 ctcctttgattgaggaaaagacttcgcttcctgcaaaagtaacagtctaactaatgttgaccacattaaatgaggttgatgaaaataccagctaa 16242605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 344 - 462
Target Start/End: Complemental strand, 29614155 - 29614037
Alignment:
Q  344 ctaagtccaacatctctttgaaactcctttgattgaagaaaaga-cttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 442  Q
    |||||||| ||||||| | ||| |||||| | |||||||||| | |||  |||| ||||||||||||| ||||| ||| |||||||||||||||||||||    
T  29614155 ctaagtcctacatctcgtcgaa-ctccttcgtttgaagaaaaaaactttgattcatgcaagagtaaaagtcaactaatattgaccacattaaatgaggct 29614057  T
Q  443 ggtgaaaataccagctaaca 462  Q
     ||||||||| |||||||||    
T  29614056 agtgaaaatagcagctaaca 29614037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 27304547 - 27304424
Alignment:
Q  68 tgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctcc 167  Q
    ||||||||| ||||| |||  |||| | || ||||||||||||||| |||||| ||||||| || |||||||||| | ||| | ||||||||||||  ||    
T  27304547 tgcagaaacttaaagaaaatataaattgcattgcattaaaaataaaagtggtttgacaaattctatacatacattttgtataattcttttctctcgagcc 27304448  T
Q  168 ggtactttgaatgttttagaattt 191  Q
    | |||||||| |||| ||||||||    
T  27304447 gatactttgagtgttgtagaattt 27304424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 449
Target Start/End: Complemental strand, 4832300 - 4832190
Alignment:
Q  341 atgctaagtccaacatctctttgaaactcctttgattgaag-aaaagacttcaattcctgc-aagagtaaaaatcaaccaatgttgaccacattaaatga 438  Q
    ||||||||||||||||||| |  ||||||||    || ||| |||||||||| |||||||| ||||  |||| ||||| ||||||||||| |||||||||    
T  4832300 atgctaagtccaacatctcgtcaaaactcctcaagttcaagaaaaagacttcgattcctgcaaagataaaaagtcaactaatgttgaccatattaaatga 4832201  T
Q  439 ggctggtgaaa 449  Q
    |||||||||||    
T  4832200 ggctggtgaaa 4832190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 8737308 - 8737234
Alignment:
Q  68 tgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacatt 142  Q
    ||||||||  ||||| |||| |||| | || |||||| |||||||||||||||| ||||||||||||||| ||||    
T  8737308 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 8737234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 9089546 - 9089472
Alignment:
Q  68 tgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacatt 142  Q
    ||||||||  ||||| |||| |||| | || |||||| |||||||||||||||| ||||||||||||||| ||||    
T  9089546 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 9089472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 13409833 - 13409879
Alignment:
Q  73 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggt 119  Q
    |||| ||||||||||||||||| || |||||||||||||||||||||    
T  13409833 aaacttaaaggaaaggtaaaatgcattgcattaaaaataaaggtggt 13409879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 379 - 462
Target Start/End: Complemental strand, 13428488 - 13428406
Alignment:
Q  379 aagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaaca 462  Q
    ||||||| ||||| |||| ||||| ||  ||| ||||| ||||| |||| ||||||| ||||||||||||| ||||||||||||    
T  13428488 aagaaaacacttcgattcatgcaa-agataaagtcaactaatgtcgaccgcattaaacgaggctggtgaaattaccagctaaca 13428406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 1e-75; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 22397777 - 22397548
Alignment:
Q  8 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaa-ggaaaggtaaaatacaatgcattaa 106  Q
    ||||||||||||||||| ||||||||||||||||| |||||    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  22397777 tgtggcgtctttcgacaaaaaaaaggttttaaaagaaaagtct--gcattaagtttaaattgcagaaacttaaaaggaaaggtaaaatacaatgcattaa 22397680  T
Q  107 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatg-ttttagaattttgtataggtgattt 205  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || || |||||||||| ||||||||||||||    
T  22397679 aaataaaggttgttcgacaaatcctttacatacattctttatgactattttctctcgcgccggtacttcgagtgtttttagaattctgtataggtgattt 22397580  T
Q  206 gcgacccgtttt-tctatggaaaactcttatt 236  Q
    ||||||||||||  ||| ||||||||||||||    
T  22397579 gcgacccgttttccctacggaaaactcttatt 22397548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 99 - 314
Target Start/End: Original strand, 16177304 - 16177519
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 198  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||      ||||||| || ||||||||||||||||||||    
T  16177304 tgcattaaaaataaatgtggttcgaaaaatcctttacatacattctttatgactcttttctcttatgttggtacttcgagtgttttagaattttgtatag 16177403  T
Q  199 gtgatttgcgacccgtttttc-tatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 297  Q
    || |||||||||||||||| | |||||||||||  |||| ||||| ||| | ||| | |||||||||| |||||||||||||||||| ||||||||||||    
T  16177404 gttatttgcgacccgttttccatatggaaaactaatatttatacatagaaaataagt-ggaaagaaactaatcccacaatcagcactccttccatgtaga 16177502  T
Q  298 caaacgcttgtctccca 314  Q
    ||| |||||||||||||    
T  16177503 caaccgcttgtctccca 16177519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 346 - 559
Target Start/End: Original strand, 17525233 - 17525444
Alignment:
Q  346 aagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggt 445  Q
    ||||| |||||||| |||||||| |||   ||||||||||| |||| ||||||  | |||||||| ||||| |||||||||||||||||||||| |||||    
T  17525233 aagtctaacatctcgttgaaacttcttaagttgaagaaaaggcttcgattcctagaggagtaaaagtcaactaatgttgaccacattaaatgagactggt 17525332  T
Q  446 gaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttc 545  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||||  |||||| |||| |||||||||    |||||||| ||||| ||||||||||     
T  17525333 gaaattaccagctaacaaattgccccccaa-aaatgctattttcgacaaaatatattcaaaggagagaatcagaatttttga-aaaactctaagtattta 17525430  T
Q  546 aaagcatgatgtca 559  Q
    ||||||||||||||    
T  17525431 aaagcatgatgtca 17525444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 103 - 315
Target Start/End: Original strand, 15830026 - 15830238
Alignment:
Q  103 ttaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtga 202  Q
    ||||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||| | | | |||||||| |||||||||||| |||||||| ||    
T  15830026 ttaaaaataaaagtgattcgacaaatcttttacatacattatttatgactcttttctctcacactgatactttgagtgttttagaattctgtataggcga 15830125  T
Q  203 tttgcgacccgtttttc-tatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaa 301  Q
    ||||||||||||||| | |||| |||||| ||||| ||||| ||| | |||  ||||||||||| ||||||| ||| ||||||  ||||||||||||||     
T  15830126 tttgcgacccgttttccttatgcaaaactattatttatacatagaaaataa-gtggaaagaaactaatcccataattagcactctttccatgtagacaac 15830224  T
Q  302 cgcttgtctcccat 315  Q
     | |||||||||||    
T  15830225 tgtttgtctcccat 15830238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 17524797 - 17524998
Alignment:
Q  17 tttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaag 114  Q
    |||||| | |||||||||||| |||| |||||| |||| ||||| |||||| ||| |||||| ||||| |||  |||| || ||||||||||||||||||    
T  17524797 tttcgataaaaaaaaggtttttaaaaacaaagtaaaggaattaattttaaaattgtagaaacttaaagaaaaaataaattataatgcattaaaaataaag 17524896  T
Q  115 gtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgt 214  Q
    || || |||||| ||||||| ||||||||||||||||||||||||||| | || | |||| || |||||||||||| |||||||||||||||||||| ||    
T  17524897 gttgtccgacaa-tcctttaaatacattctttatgactcttttctctcacgccagcacttcgagtgttttagaattatgtataggtgatttgcgacctgt 17524995  T
Q  215 ttt 217  Q
    |||    
T  17524996 ttt 17524998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 1177349 - 1177214
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacat----tctttatgactcttttctctcgctccggtactttgaatgttttagaattttgt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |  |||||| || |||||||||||| |||    
T  1177349 tgcattaaaaataaaggtggttcgacaaatcctttacatacatgtattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgt 1177250  T
Q  195 ataggtgatttgcgacccgtttttctatggaaaact 230  Q
    |||| ||||||||| || ||||| ||||| ||||||    
T  1177249 atagatgatttgcgtcctgttttcctatgcaaaact 1177214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 401 - 529
Target Start/End: Complemental strand, 31125872 - 31125745
Alignment:
Q  401 aagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatata 500  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| || |||||  |||||| || |||||||    
T  31125872 aagagtaaaagtcaactaatgttgaccacattaaatgaggatggtgaaaatatcagctaaaaaattgccccctaa-aaatgaaattttctactgaatata 31125774  T
Q  501 atcaacggagagaattgacatttttgaga 529  Q
     |||| ||||||||||| |||||||||||    
T  31125773 ttcaaaggagagaattggcatttttgaga 31125745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 18713709 - 18713842
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| ||||||||| ||||| || | |||| | || ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  18713709 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 18713808  T
Q  158 ctctcgctccggtactttgaatgttttagaattt 191  Q
    ||||||   ||||||||||| |||| ||||||||    
T  18713809 ctctcgtgacggtactttgagtgttatagaattt 18713842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 17948023 - 17947890
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| |||| |||| |||||||||| |||| | || || ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||     
T  17948023 aagttaaaaatgcataaacttaaaggaaagataaattgcattgaattaaaaataaaggtggttcgacaaatcctttacatacattttatataactctttc 17947924  T
Q  158 ctctcgctccggtactttgaatgttttagaattt 191  Q
    |||| || ||| ||||| ||||||| ||||||||    
T  17947923 ctcttgcgccgttacttcgaatgttgtagaattt 17947890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 14763090 - 14762985
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| ||||||||| ||||| |||| |||| | || ||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||    
T  14763090 aagttaaaagtgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgagaactcctttacatacattctgtataactctttt 14762991  T
Q  158 ctctcg 163  Q
    ||||||    
T  14762990 ctctcg 14762985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 382 - 556
Target Start/End: Complemental strand, 22394179 - 22394009
Alignment:
Q  382 aaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatg 481  Q
    |||||||||  ||||||||||||||||||   ||| ||||||||||||||||||  |||||||||||| ||||| |||||| |||||||||||| |||||    
T  22394179 aaaagactttgattcctgcaagagtaaaacggaactaatgttgaccacattaaa--aggctggtgaaattaccaactaacagattgccccccaa-aaatg 22394083  T
Q  482 ccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatg 556  Q
     ||||||||||  ||| || |  | ||||| |||||  ||||||||| |||| ||||||||| || |||||||||    
T  22394082 tcattttcgacaaaatctatttgaaggagataattggaatttttgag-aaactctaagtattccagagcatgatg 22394009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 31126351 - 31126065
Alignment:
Q  48 ttaaggcattaagttt-aaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacatac 139  Q
    |||| ||||||||||| |||||||||||||  |||| ||||  |||||||||       ||||||| |||||||||||||||| ||||||||||||||||    
T  31126351 ttaatgcattaagttttaaattgcagaaactcaaagaaaagaaaaaatacaaatgcaagtgcattataaataaaggtggttcggcaaatcctttacatac 31126252  T
Q  140 attct------------ttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaa 226  Q
    ||| |            ||||||||||||||||| ||   | ||||| || ||||||||||||   |||||| |||||| ||||||||||  ||| ||||    
T  31126251 attttaaaatatgagatttatgactcttttctcttgcgttgttacttcgagtgttttagaattccatataggagatttgagacccgttttccctaaggaa 31126152  T
Q  227 aactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    |||| ||||| ||||| ||  | |||  ||||||||||| |||||||  || |||||| ||||||||||||||| |||||||||||||    
T  31126151 aactattatttatacataggaaataa-gtggaaagaaactaatcccaagattagcactccttccatgtagacaatcgcttgtctccca 31126065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 16177672 - 16177759
Alignment:
Q  378 gaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct---ggtgaaaataccagctaaca 462  Q
    |||||||||||||  |||||| ||||||||||| ||||| |||||| ||||||||||||||||||   ||||||||||||||||||||    
T  16177672 gaagaaaagactttgattcctacaagagtaaaagtcaactaatgttaaccacattaaatgaggctggaggtgaaaataccagctaaca 16177759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 1176994 - 1176918
Alignment:
Q  344 ctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatg 421  Q
    |||| ||||||||||| ||||| ||||||| ||||||||||||| ||| |||||||||||||||||| ||||| ||||    
T  1176994 ctaaatccaacatctcgttgaa-ctccttttattgaagaaaagatttcgattcctgcaagagtaaaagtcaactaatg 1176918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 28712360 - 28712461
Alignment:
Q  60 gtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttttc 158  Q
    |||||||  |||||||| ||||| ||||||||| |||| ||||||||   ||||||||||||||||||||   ||||||||||| | |||||||||||||    
T  28712360 gtttaaaacgcagaaacttaaagaaaaggtaaattacattgcattaatg-taaaggtggttcgacaaatcagattacatacattatatatgactcttttc 28712458  T
Q  159 tct 161  Q
    |||    
T  28712459 tct 28712461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 13002906 - 13002854
Alignment:
Q  110 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 161  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  13002906 taaaggtggttcgacaaatcagtttacatacattctgtatgactcttttctct 13002854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 365 - 451
Target Start/End: Original strand, 32784447 - 32784534
Alignment:
Q  365 aactcctttgattgaagaaaa-gacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaat 451  Q
    |||||| ||||||| |||||| || ||||||||||| || ||||||| ||||| ||| || ||||||||||||||| ||| |||||||    
T  32784447 aactccattgattgtagaaaaagatttcaattcctgtaaaagtaaaagtcaactaatattaaccacattaaatgagactgatgaaaat 32784534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 25945846 - 25945916
Alignment:
Q  73 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatc-ctttacatacattc 143  Q
    |||| ||||||| ||||||||| || |||||||||||||||||||| || |||||||  |||||||||||||    
T  25945846 aaacttaaaggagaggtaaaatgcattgcattaaaaataaaggtgg-tctacaaatcagtttacatacattc 25945916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 24154229 - 24154179
Alignment:
Q  110 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttct 159  Q
    ||||||||||||||||||||  |||||||||||| | ||||||||||||||    
T  24154229 taaaggtggttcgacaaatcagtttacatacattttgtatgactcttttct 24154179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 10163317 - 10163272
Alignment:
Q  117 ggttcgacaaatcc-tttacatacattctttatgactcttttctct 161  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||    
T  10163317 ggttcgacaaatcagtttacatacattctatatgactcttttctct 10163272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 6e-68; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 11361595 - 11361830
Alignment:
Q  8 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 107  Q
    ||||| |||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  11361595 tgtggtgtcttttgacaggaaaaaagttttaaaagcaaagtaaaggcattaagtttaaattgcagaaatttaaatgaaaggtaaaatacaatgcattaaa 11361694  T
Q  108 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgc 207  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||  |||||  | || |||||||||||| |||||||||||| | |    
T  11361695 aataaaggtggttcgacaaatcctttacatacattctttgtaactcttttccctcgcgtcggtaagtcgagtgttttagaattctgtataggtgatctac 11361794  T
Q  208 gacccgtttt-tctatggaaaactcttattaataca 242  Q
    |||| |||||  ||| |||||||||||||| |||||    
T  11361795 gacctgttttccctacggaaaactcttatttataca 11361830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 9409370 - 9409168
Alignment:
Q  15 tctttcgacagaaaaaaggttttaaaa-gcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaa 113  Q
    |||| ||||||||||  |||||||||| ||||||| || | ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||    
T  9409370 tcttacgacagaaaaggggttttaaaaagcaaagtaaaagtattaagtttaaattgcataaacttaaaggaaagataaaatacaatgcattaaaaataaa 9409271  T
Q  114 ggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccg 213  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||| || |||||||||||| | |||| |||||||||||||||    
T  9409270 ggtggttcgacaaatcctttacatacattctttataacttttttctcttgcgccggtacttcgagtgttttagaattctatataagtgatttgcgacccg 9409171  T
Q  214 ttt 216  Q
    |||    
T  9409170 ttt 9409168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 320 - 463
Target Start/End: Original strand, 11362017 - 11362160
Alignment:
Q  320 ttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaa 419  Q
    |||||||||||||| ||||  ||||||||||||||||||| ||||||||||||   ||||||||||||||||||| ||||||||||||||| ||||| ||    
T  11362017 ttaaggcttcgagaatttttcatgctaagtccaacatctcgttgaaactccttaagttgaagaaaagacttcaatacctgcaagagtaaaagtcaactaa 11362116  T
Q  420 tgttgaccacattaaatgaggctggtgaaaataccagctaacaa 463  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  11362117 tgttgaccactttaaatgaggctggtgaaaataccagctaacaa 11362160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 16675086 - 16675259
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatc-ctttacatacattctttatgactcttt 156  Q
    ||||||||| ||||||||| ||||| ||||||||| |  | |||||| |||||||| |||||||||||||||  |||||||||||||| ||| ||||| |    
T  16675086 aagtttaaaatgcagaaacataaagaaaaggtaaattgtattgcatttaaaataaaagtggttcgacaaatcattttacatacattctgtataactctct 16675185  T
Q  157 tctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaact 230  Q
    |||||||| ||||||||| || |||||||||| | | |||| | |||||| |||||||||||| |||||||||||    
T  16675186 tctctcgcaccggtacttcgagtgttttagaa-tatctataagggatttgtgacccgtttttcatatggaaaact 16675259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 5358040 - 5358102
Alignment:
Q  99 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctct 161  Q
    |||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||    
T  5358040 tgcattaaaaataaaggtagttcgacaaatcatttacatacattatgtatgactcttttctct 5358102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 4697454 - 4697626
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttt 156  Q
    |||||||||  ||| |||| ||||| ||||||||| |  | |||||||||  ||||||||||||||| ||||   ||||||||||| | ||| ||| | |    
T  4697454 aagtttaaaacgcataaacttaaagaaaaggtaaattgtattgcattaaag-taaaggtggttcgacgaatcagattacatacattttgtataactttgt 4697552  T
Q  157 tctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaact 230  Q
    |||||| | ||||| |||||| |||||||||| ||| |||| |||||||||||| | |||| | |||||||||||    
T  4697553 tctctcacgccggtgctttgagtgttttagaa-tttctataagtgatttgcgactcattttccatatggaaaact 4697626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 18558516 - 18558469
Alignment:
Q  73 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggtt 120  Q
    |||| ||||||||| ||||||| || ||||||||||||||||||||||    
T  18558516 aaacttaaaggaaatgtaaaatgcattgcattaaaaataaaggtggtt 18558469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 26654195 - 26654144
Alignment:
Q  111 aaaggtggttcgacaaatcct-ttacatacattctttatgactcttttctct 161  Q
    ||||||||||||||||||| | ||||||||||| | ||||||||||||||||    
T  26654195 aaaggtggttcgacaaatcatattacatacattatgtatgactcttttctct 26654144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 10071001 - 10071078
Alignment:
Q  418 aatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaa 496  Q
    ||||||||||| |||||||||| |||  |||| |||  ||||||||| | |||||||| |||||| |||||||||||||    
T  10071001 aatgttgaccatattaaatgagcctgtcgaaattacaggctaacaaaattccccccaa-aaatgcaattttcgacggaa 10071078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 1e-65; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 53 - 314
Target Start/End: Original strand, 20146169 - 20146437
Alignment:
Q  53 gcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacatacattctt 145  Q
    |||||||||||||||||||||||| ||||| ||||| |||||| ||       |||||||||||||||| |||| | | ||||||||||||||||| |||    
T  20146169 gcattaagtttaaattgcagaaacttaaagaaaaggaaaaataaaaatgcaagtgcattaaaaataaagatggtccaaaaaatcctttacatacat-ctt 20146267  T
Q  146 tatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttattaatacaaa 244  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||||    
T  20146268 tatgactcttttctctcgcaccggtactttgagtgttttagaattttgtataggtgatttgcgacccattttccatatggaaaactcttatttatacaaa 20146367  T
Q  245 gatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    |  | ||| |||||||||||| | |||||| |||| |||| |||| |||||||||| | |||||||||||    
T  20146368 gcaaataacttggaaagaaactagtcccacgatcaacactccttctatgtagacaatcacttgtctccca 20146437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 34 - 314
Target Start/End: Complemental strand, 11014027 - 11013745
Alignment:
Q  34 ttttaaaagcaaagttaaggcattaagtttaaa-ttgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctt 132  Q
    ||||||||||||||| ||||||||||||||||| || | ||||| |||||||||  |||| ||||||||||||||||||||||||| |||||||||||||    
T  11014027 ttttaaaagcaaagtaaaggcattaagtttaaaattcctgaaacttaaaggaaaaataaagtacaatgcattaaaaataaaggtggctcgacaaatcctt 11013928  T
Q  133 tacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactc 231  Q
    |||||| |||||||||||||||||||||||   | |||| || || ||||||| ||||||||||||||||||||| |||| ||||  |||||||||||||    
T  11013927 tacatatattctttatgactcttttctctcaagctggtatttcgagtgttttaaaattttgtataggtgatttgcaacccattttacctatggaaaactc 11013828  T
Q  232 ttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
     |||  ||||| ||| |   |  |||||| |    |||||||| ||||||||| ||||||||||||||| | |||||||||||    
T  11013827 ctatatatacatagaaaaataactggaaaaagtacaatcccacgatcagcacttcttccatgtagacaaccacttgtctccca 11013745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 64 - 314
Target Start/End: Original strand, 33103021 - 33103273
Alignment:
Q  64 aaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcg 163  Q
    ||||||||||||| |||||||||| |||| | || ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||     
T  33103021 aaattgcagaaacttaaaggaaagataaattgcattgcattaaaaataaatgtagttcgacaaatcctttacatacattctatatgactcttttctctca 33103120  T
Q  164 ctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt--tctatggaaaactcttattaataca-aagatactaatttggaaa 260  Q
    |  |||||||| || |||||||||||| |||||||||||||||||||| |||||   ||||||||||||  |||| ||||| |  | | |||  ||||||    
T  33103121 cgtcggtacttcgagtgttttagaattatgtataggtgatttgcgacctgttttcccctatggaaaactactatttatacataccaaaataa-ctggaaa 33103219  T
Q  261 gaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
     |    ||||||||||||| |||| ||||||||||||||| | |||||||||||    
T  33103220 aagcataatcccacaatcaacacttcttccatgtagacaaccacttgtctccca 33103273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 322 - 459
Target Start/End: Original strand, 20146549 - 20146686
Alignment:
Q  322 aaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatg 421  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||  ||||||  |||||||||| |||||||||||||||| | | ||| ||||    
T  20146549 aaggcttcgagacttttcaatgctaagtccaacatctcgtcgaaactcctacgattgagtaaaagacttcgattcctgcaagagtaatagttaactaatg 20146648  T
Q  422 ttgaccacattaaatgaggctggtgaaaataccagcta 459  Q
    ||| |||||||||||||| |||||||| ||||||||||    
T  20146649 ttggccacattaaatgagactggtgaatataccagcta 20146686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 341 - 462
Target Start/End: Complemental strand, 11013614 - 11013493
Alignment:
Q  341 atgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgagg 440  Q
    ||||||||||||||||||| | ||||||||||   |||||||||||||||| |||||||||||||||||| | | | |||||||||||||||||||||||    
T  11013614 atgctaagtccaacatctcgtcgaaactccttaagttgaagaaaagacttcgattcctgcaagagtaaaagtaagctaatgttgaccacattaaatgagg 11013515  T
Q  441 ctggtgaaaataccagctaaca 462  Q
    ||| ||||| ||||||||||||    
T  11013514 ctgatgaaattaccagctaaca 11013493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 36571826 - 36571655
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| ||||||||| ||||| |||| | || | || |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  36571826 aagttaaaactgcagaaacttaaag-aaagattaattgcattgcattaaaaataaaggtggttcgacaaatcctttacatacattatgtataactctttt 36571728  T
Q  158 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaact 230  Q
    ||||||  |  |||||| || |||| ||||| ||| |||| |||||||||||||| ||||| ||||||||||||    
T  36571727 ctctcgtgctagtacttcgagtgttgtagaa-tttctataagtgatttgcgacccatttttcctatggaaaact 36571655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 20150563 - 20150435
Alignment:
Q  102 attaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtg 201  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | ||||||| |||||||||||  |||||||| || |||| ||||||| ||||||||||    
T  20150563 attaaaaataaaggtggtttgacaaatcctttgcatgcattttgtatgacttttttctctcgcgtcggtacttcgagtgttgtagaattatgtataggtg 20150464  T
Q  202 atttgcgacccgtttt-tctatggaaaac 229  Q
    ||||| ||||||||||  |||||||||||    
T  20150463 atttgagacccgttttccctatggaaaac 20150435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 381 - 574
Target Start/End: Complemental strand, 22619770 - 22619579
Alignment:
Q  381 gaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaat 480  Q
    ||||||||||| ||||||||||   ||||| ||||| |||||||||||||||||||||| ||  || |||||   |||||||||||||| ||||| ||||    
T  22619770 gaaaagacttcgattcctgcaaagataaaagtcaactaatgttgaccacattaaatgagccttttggaaatataggctaacaaattgcctcccaa-aaat 22619672  T
Q  481 gccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatgtcacaattatcatgactt 574  Q
    | |||||||||| ||||| | || | ||||| |||||  | |||||| |||||  |||||||||||||||||||||||| | | ||||||||||    
T  22619671 gtcattttcgactgaatacattcgaaggagataattggtaattttga-aaaactataagtatttcaaagcatgatgtcatattaatcatgactt 22619579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 22607984 - 22607834
Alignment:
Q  78 taaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttga 177  Q
    |||||||||| |||| |||| |||||||||||||||||||||||  || |||||||||||||||| ||||| |||||||||||| ||  |||||||| ||    
T  22607984 taaaggaaagataaactacattgcattaaaaataaaggtggttcagcagatcctttacatacattttttataactcttttctcttgcgacggtacttcga 22607885  T
Q  178 atgttttagaattttgtataggtgatttgcgacccgttt-ttctatggaaaa 228  Q
     |||| |||||  ||  ||| ||||||||||||||||||  |||||||||||    
T  22607884 ttgttatagaa-attccataagtgatttgcgacccgtttcctctatggaaaa 22607834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 102 - 314
Target Start/End: Complemental strand, 13202192 - 13201980
Alignment:
Q  102 attaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtg 201  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||| |||||| || || |||| ||||| ||| |||| |||    
T  13202192 attaaaaataaaggtggttcgacaaatcctttacatacattatgtataactattttctctcgcgccggtatttcgagtgttgtagaa-tttctataagtg 13202094  T
Q  202 atttgcgacccgttttt-ctatggaaaactcttattaatacaaag-atactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagaca 299  Q
    |||||||||  |||||| ||||| ||||||  |||| ||||| || | | |||  |||||| |  | ||  |||| ||||||||| ||||||| ||||||    
T  13202093 atttgcgacatgtttttcctatgaaaaactactatttatacatagcaaaataa-ctggaaaaagcctaactccacgatcagcacttcttccatttagaca 13201995  T
Q  300 aacgcttgtctccca 314  Q
    | |||||||||||||    
T  13201994 accgcttgtctccca 13201980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 17615272 - 17615430
Alignment:
Q  72 gaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggta 171  Q
    ||||| ||||| |||||| || | || |||||| ||||||||||| ||||||||||||||||||||||||| | | | |||||||| |||| | || |||    
T  17615272 gaaacttaaagaaaaggttaactgcattgcattcaaaataaaggttgttcgacaaatcctttacatacattatgtgtaactcttttttctcccgcctgta 17615371  T
Q  172 ctttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 230  Q
    ||| || |||| ||||| ||| |||| |||||| | ||||||||||  ||||||||||||    
T  17615372 cttcgagtgttgtagaa-tttctataagtgattcgtgacccgttttccctatggaaaact 17615430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 22620153 - 22620063
Alignment:
Q  101 cattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattt 191  Q
    ||||||||||||||||||||||||||||| |||||||||  | |  || ||| ||||||||||||| ||||||| || |||| ||||||||    
T  22620153 cattaaaaataaaggtggttcgacaaatcttttacatacggtttgaataactattttctctcgctctggtacttcgagtgttgtagaattt 22620063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 20866221 - 20866293
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcc 130  Q
    ||||| ||||||||||||| ||||| |||| |||| |    ||||||||||||||||||||||||||||||||    
T  20866221 aagttaaaattgcagaaacttaaagaaaagataaattgtgttgcattaaaaataaaggtggttcgacaaatcc 20866293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 13232801 - 13232737
Alignment:
Q  179 tgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttattaataca 242  Q
    |||||||||||| || ||||||||||||||| |||||||  |||||||||||| ||||| |||||    
T  13232801 tgttttagaattatgcataggtgatttgcgatccgttttccctatggaaaactattatttataca 13232737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 20886571 - 20886610
Alignment:
Q  80 aaggaaaggtaaaatacaatgcattaaaaataaaggtggt 119  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  20886571 aaggaaaggtaaaatgcattgcattaaaaataaaggtggt 20886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 23455191 - 23455242
Alignment:
Q  110 taaaggtggttcgacaaatcct-ttacatacattctttatgactcttttctc 160  Q
    |||||||||||||||||||| | ||||||||||| | |||||||||||||||    
T  23455191 taaaggtggttcgacaaatcatattacatacattttgtatgactcttttctc 23455242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 463
Target Start/End: Original strand, 17615684 - 17615766
Alignment:
Q  381 gaaaagacttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaa 463  Q
    ||||||| ||| ||||||||||   ||||| ||||| |||||||||| ||||||||||| ||| ||||| |||  ||||||||    
T  17615684 gaaaagatttcgattcctgcaaagataaaagtcaactaatgttgaccgcattaaatgagtctgttgaaattacatgctaacaa 17615766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 107; Significance: 5e-53; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 53 - 314
Target Start/End: Complemental strand, 5851 - 5582
Alignment:
Q  53 gcattaagtttaaattgcagaaacgtaaaggaaaggtaaaata------caa-tgcattaaaaataaaggtggttcgacaaatcctttacatacattctt 145  Q
    ||||||||||||||||||| |||| ||||| ||||| ||||||      ||| ||||||||||||||||||||| |||||||| |||||||||||||| |    
T  5851 gcattaagtttaaattgcaaaaacttaaagaaaaggaaaaataacaatgcaagtgcattaaaaataaaggtggtccgacaaattctttacatacattcct 5752  T
Q  146 tatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttattaatacaaa 244  Q
    |||||||||||| |||||   ||||||||  |  ||||||||||| |||||||||||||| |||||||||||  |||| ||||||||||||| |||||||    
T  5751 tatgactcttttttctcgtgtcggtacttcaagcgttttagaattctgtataggtgatttacgacccgttttccctatagaaaactcttatttatacaaa 5652  T
Q  245 gatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    |  | ||| |||||| ||||| |||||||| |||| |||| ||||||| ||||||| |||||||||||||    
T  5651 gcaaataacttggaatgaaactaatcccacgatcaacactccttccatatagacaaccgcttgtctccca 5582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 322 - 455
Target Start/End: Complemental strand, 5470 - 5337
Alignment:
Q  322 aaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaaccaatg 421  Q
    |||||||||||||||||  ||||||||||||||||||| | |||| | |||  ||||| ||||| ||||| || ||||||||||||||| ||||| || |    
T  5470 aaggcttcgagactttttgatgctaagtccaacatctcgtcgaaaattcttcaattgatgaaaaaacttcgatacctgcaagagtaaaagtcaactaaag 5371  T
Q  422 ttgaccacattaaatgaggctggtgaaaatacca 455  Q
    ||||||||| ||||||||||||||||||||||||    
T  5370 ttgaccacaataaatgaggctggtgaaaatacca 5337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 104; Significance: 3e-51; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 20793 - 21097
Alignment:
Q  8 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 107  Q
    |||||||||||| |||||||||| ||||||||||| |   | || |||||||||||||| ||||||||| ||||||||||  ||||| ||||||||| ||    
T  20793 tgtggcgtcttttgacagaaaaa-ggttttaaaagtagtataaatgcattaagtttaaaatgcagaaacttaaaggaaagaaaaaatgcaatgcatttaa 20891  T
Q  108 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgc 207  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||     ||||||  | |||||||||||| | |||| |||||||||    
T  20892 aataaaggtggttccacaaattctttacatacattctttatgactcttttctctcgtgttagtacttcaagtgttttagaattat-tatacgtgatttgc 20990  T
Q  208 gacccgtt-tttctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgctt 306  Q
    ||||| || |  |||||||| |||  |||| ||||| ||  | |||  ||||||||||| |||||||| |||| |||| ||||||||| ||||| |||||    
T  20991 gacccattgtccctatggaagactactatttatacataggaaataa-gtggaaagaaactaatcccacgatcaacactccttccatgttgacaaccgctt 21089  T
Q  307 gtctccca 314  Q
    ||||||||    
T  21090 gtctccca 21097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 341 - 452
Target Start/End: Original strand, 21225 - 21337
Alignment:
Q  341 atgctaagtccaacatctctttgaaactcctttgattgaagaaaaga-cttcaattcctgcaagagtaaaaatcaaccaatgttgaccacattaaatgag 439  Q
    ||||| ||||||||||||| | ||||||| || | ||||||||||   |||| |||| ||||| | ||||| ||||| |||||||| || ||||||||||    
T  21225 atgcttagtccaacatctcgtcgaaactctttcggttgaagaaaaatgcttcgattcttgcaaaaataaaagtcaacaaatgttgatcatattaaatgag 21324  T
Q  440 gctggtgaaaata 452  Q
    | |||||||||||    
T  21325 gatggtgaaaata 21337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 72; Significance: 4e-32; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 58 - 314
Target Start/End: Complemental strand, 374294 - 374041
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| |||||||| |||| |||||||||| |||| | || |||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||    
T  374294 aagttaaaattgcaaaaac-taaaggaaagataaattgcattgcattaaaaataaaggtggttcgacaaatactttacatacattttgtat-actctttt 374197  T
Q  158 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaactcttattaatacaaag-atactaatttg 256  Q
    ||||||| || ||||||||| |||| ||| | ||| |||| |||||||||||||  |||  ||||||||||||  |||| ||||| || | | ||| |      
T  374196 ctctcgcgcctgtactttgagtgttgtagca-tttctataagtgatttgcgaccgttttccctatggaaaactactatttatacatagcaaaataact-- 374100  T
Q  257 gaaagaaac-gaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    |||| || |  |||| ||| ||||||||| ||||||||||||||| |||||||||||||    
T  374099 gaaaaaagcaaaatctcacgatcagcacttcttccatgtagacaaccgcttgtctccca 374041  T

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Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 406 - 559
Target Start/End: Complemental strand, 373847 - 373696
Alignment:
Q  406 taaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaa 505  Q
    ||||| ||||| ||||||||||||||||||||||| |||| |||  |||| ||||||||||||||||||| ||| ||||||||||||  ||  |  |  |    
T  373847 taaaagtcaactaatgttgaccacattaaatgaggttggtaaaataaccaactaacaaattgccccccaa-aaaagccattttcgacttaaattttttga 373749  T
Q  506 cggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatgtca 559  Q
     | ||||||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  373748 agaagagaattgtcatttttga-aaaactctaagtatttcaaagcatgatgtca 373696  T

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Target: scaffold0337 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 17221 - 17392
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| ||||||||| ||||| || | |||| | || ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17221 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 17320  T
Q  158 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 230  Q
    ||||||| ||||||| | || |||| || || ||| |||| |||||||| ||||||||||  ||||||||||||    
T  17321 ctctcgcgccggtac-tcgagtgttgtacaa-tttctataagtgatttgtgacccgttttccctatggaaaact 17392  T

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Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 4546 - 4661
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 157  Q
    ||||| ||| ||||||||| ||||| ||   |||| | || ||| ||||||||||||||||||| ||||||| |||| || |||||| ||| ||||||||    
T  4546 aagttaaaagtgcagaaacttaaagaaataataaattgcattgctttaaaaataaaggtggttctacaaatcttttaaatgcattctgtataactctttt 4645  T
Q  158 ctctcgctccggtact 173  Q
    ||||||| ||||||||    
T  4646 ctctcgcgccggtact 4661  T

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Target: scaffold0795 (Bit Score: 65; Significance: 5e-28; HSPs: 2)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 318 - 462
Target Start/End: Complemental strand, 5869 - 5725
Alignment:
Q  318 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgcaagagtaaaaatcaacc 417  Q
    ||||| |||||| || |||||  |||||||||| |||||||| ||||||||||||| | ||| |||||| |||| ||||||||||||  |||| ||| |     
T  5869 ctttagggcttcaaggctttttcatgctaagtctaacatctcgttgaaactcctttaactgaggaaaaggcttcgattcctgcaagaaaaaaagtcacct 5770  T
Q  418 aatgttgaccacattaaatgaggctggtgaaaataccagctaaca 462  Q
    |||||||||| |||||||||||| |||| ||||||||||||||||    
T  5769 aatgttgaccgcattaaatgaggttggtaaaaataccagctaaca 5725  T

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Target: scaffold0795; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 6031 - 5971
Alignment:
Q  254 ttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 314  Q
    |||||||||||| |||||||| |||||||||  |||||||||| ||| |||||||||||||    
T  6031 ttggaaagaaactaatcccacgatcagcactcgttccatgtaggcaaccgcttgtctccca 5971  T

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Target: scaffold0016 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 12991 - 13092
Alignment:
Q  130 ctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaa 228  Q
    ||||||||||||||||||||||||||||||||||| |  |||||| || |||||||||||| || |||||||||||||||||||||||  ||||||||||    
T  12991 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaa 13090  T
Q  229 ct 230  Q
    ||    
T  13091 ct 13092  T

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Target: scaffold0161 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 343 - 455
Target Start/End: Original strand, 5276 - 5388
Alignment:
Q  343 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcctgc-aagagtaaaaatcaaccaatgttgaccacattaaatgaggc 441  Q
    ||||||||||||||||| ||||| ||||||   |||||||||||||||  |||||||| |||| ||||| ||||| ||||||||||||||||||||| ||    
T  5276 gctaagtccaacatctcgttgaagctccttaagttgaagaaaagactttgattcctgcgaaga-taaaagtcaactaatgttgaccacattaaatgatgc 5374  T
Q  442 tggtgaaaatacca 455  Q
    |||||||| |||||    
T  5375 tggtgaaattacca 5388  T

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Target: scaffold0142 (Bit Score: 48; Significance: 8e-18; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 20572 - 20725
Alignment:
Q  89 taaaatacaatgcattaaaaataaaggtggttcgacaaatccttt-acatacattctttatgactcttttctctcgctccggtactttgaatgttttaga 187  Q
    |||| |||| |||||||||| ||||||||||| |||||||  ||| ||||||||| | ||| ||||||||||||||| ||||||||| || |||||||||    
T  20572 taaattacattgcattaaaa-taaaggtggtttgacaaattatttcacatacattatgtataactcttttctctcgcgccggtacttcgagtgttttaga 20670  T
Q  188 attttgtataggtgatttgcgacccgt-ttttctatggaaaactcttattaataca 242  Q
    |  || | || |||||||||||||||| ||  |||||||||||| ||||| |||||    
T  20671 a-gttctgtaagtgatttgcgacccgtcttgcctatggaaaactattatttataca 20725  T

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Target: scaffold1102 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 996 - 871
Alignment:
Q  106 aaaataaaggtggttcgacaaatccttt-acatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatt 204  Q
    ||||||||||| |||| ||||||| ||| ||||||||| | ||| |||||| | |||||| ||||||||| || |||||| ||| ||| |||| ||||||    
T  996 aaaataaaggttgttcaacaaatcattttacatacattatgtataactcttctttctcgcgccggtacttcgagtgttttggaa-tttctataagtgatt 898  T
Q  205 tgcgacccgtttttc-tatggaaaact 230  Q
    ||| ||||||||| | |||||||||||    
T  897 tgcaacccgttttccgtatggaaaact 871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 27031 - 26930
Alignment:
Q  58 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttt 156  Q
    |||||||||  |||||||| ||||| |||| |||| | || |||||||||  |||||||||||||||||||    ||||||||||| | |||||||||||    
T  27031 aagtttaaaacgcagaaac-taaagaaaagataaattgcattgcattaaa--taaaggtggttcgacaaattagattacatacattatgtatgactcttt 26935  T
Q  157 tctct 161  Q
    |||||    
T  26934 tctct 26930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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