View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7566_high_10 (Length: 451)
Name: NF7566_high_10
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 21 - 449
Target Start/End: Original strand, 29548165 - 29548604
Alignment:
| Q |
21 |
cctggacctgcgaaaaatttaaaaattcaccccataaacccccttcttgctagaaacttgcactcctatgacattgaaaataggtgaaaagaatcttctc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29548165 |
cctggacctgcgaaaaatttaaaaattcaccccataaacccccttcttgctagaaagttgcactcctatgacattgaaaataggtgaaaagaatcttctc |
29548264 |
T |
|
| Q |
121 |
ccatttctttccacacacaaaggtgagtttcaacactgcgttctctcaaatgtaatctacgagttaacaacacattcatgcacacacggcaaataatatt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29548265 |
ccatttctttccacacacaaaggtgagtttcaacactgcgttctctcaaatgtaatctacgagttaacaacacattcatgcacacacggcaaataatatt |
29548364 |
T |
|
| Q |
221 |
cttcactttagacaaaactttaagca----------caaatcacctcgaagttattttgttcacacataaatcttttaactcatcaattgtttgcatcgt |
310 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29548365 |
cttcactatagacaaaactttaagcatcaaatgctcccaatcacctcgaagttattttgttcacacataaatcttttaactcatcaattgtttgcatcgt |
29548464 |
T |
|
| Q |
311 |
tacccttttcgtt-nnnnnnnttgaggtagcagttaagtactgacatggcaggtccacattatnnnnnnngaactattttattcataaactcaacaatct |
409 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
29548465 |
tacccttttcgttaaaaaaaattgaggtagcagttaagtactgacatggtaggtccacattataaaaaaagaactattttgttcataaactcaacaatct |
29548564 |
T |
|
| Q |
410 |
gcatcctcttccttctatcctcgtcatattcttcgacatc |
449 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
29548565 |
gcatcctcttccttctatcgtcgtcataatcttcaacatc |
29548604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 21353641 - 21353581
Alignment:
| Q |
259 |
aagttattttgttcacacataaatcttttaactcatcaattgtttgcatcgttaccctttt |
319 |
Q |
| |
|
||||||| |||||||||||||| || |||||||| |||| |||| ||||||||| ||||| |
|
|
| T |
21353641 |
aagttatgttgttcacacataagtcatttaactcttcaaccgtttacatcgttacgctttt |
21353581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University