View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_high_11 (Length: 449)
Name: NF7566_high_11
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 35344453 - 35344034
Alignment:
| Q |
1 |
accagatgacgatgaacacggaacaatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttctt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35344453 |
accagatgacgatgaacacggaacaatagctgctacattagacaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttctt |
35344354 |
T |
|
| Q |
101 |
aaggtaattagattcaactgtttctcttcnnnnnnnnnnnnnnnnacttatttaatggaatataaatatataaggaaagttaggtaaaccatacagaaaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35344353 |
aaggtaattagattcaactgtttctcttc-ttttgtatagtttttatttatttaatggaatataaatatataagaaaagttaggtaaaccatacagaaaa |
35344255 |
T |
|
| Q |
201 |
ttagggatactattttctacatcctaatttgttgtatactttggtctaattatattatgcagttcatacatacttcacatcatg--tagagaaatttatt |
298 |
Q |
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|||||||||||||||||||||||||| | | | | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | |
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| T |
35344254 |
ttagggatactattttctacatccta-----tgggaaa--ttggtctaattatattatgcacttcatacatacttcacatcatgtatagagaaatttagt |
35344162 |
T |
|
| Q |
299 |
attacaaggaaggtgttttatacatgatttctcnnnnnnnnnnnnnnnntgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattg |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35344161 |
attacaaggaaggtgttttatacatgatttctc--atatatatatatattgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattg |
35344064 |
T |
|
| Q |
399 |
tgttatcacagagtatctatcggaaggttc |
428 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
35344063 |
tgttatcacagagtatctatcggaaggttc |
35344034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 35361503 - 35361922
Alignment:
| Q |
1 |
accagatgacgatgaacacggaacaatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35361503 |
accagatgacgatgaacacggaacaatagctgctacattagacaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttctt |
35361602 |
T |
|
| Q |
101 |
aaggtaattagattcaactgtttctcttcnnnnnnnnnnnnnnnnacttatttaatggaatataaatatataaggaaagttaggtaaaccatacagaaaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35361603 |
aaggtaattagattcaactgtttctcttc-ttttgtatagtttttatttatttaatggaatataaatatataagtaaagttaggtaaaccatacagaaaa |
35361701 |
T |
|
| Q |
201 |
ttagggatactattttctacatcctaatttgttgtatactttggtctaattatattatgcagttcatacatacttcacatcatg--tagagaaatttatt |
298 |
Q |
| |
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|||||||||||||||||||||||||| | | | | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | |
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| T |
35361702 |
ttagggatactattttctacatccta-----tgggaaa--ttggtctaattatattatgcacttcatacatacttcacatcatgtatagagaaatttagt |
35361794 |
T |
|
| Q |
299 |
attacaaggaaggtgttttatacatgatttctcnnnnnnnnnnnnnnnntgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35361795 |
attacaaggaaggtgttttatacatgatttctc--atatatatatatattgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattg |
35361892 |
T |
|
| Q |
399 |
tgttatcacagagtatctatcggaaggttc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
35361893 |
tgttatcacagagtatctatcggaaggttc |
35361922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 35354660 - 35354763
Alignment:
| Q |
5 |
gatgacgatgaacacggaacaatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttcttaagg |
104 |
Q |
| |
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||||| || ||| |||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
35354660 |
gatgatgacgaaaacggaacaatggctgctacattagagaaacaattcatcacagaagtcacacttttatctcgcctccaccatcaaaatgttcttaagg |
35354759 |
T |
|
| Q |
105 |
taat |
108 |
Q |
| |
|
|||| |
|
|
| T |
35354760 |
taat |
35354763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 35355194 - 35355277
Alignment:
| Q |
348 |
tgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcatt |
431 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
35355194 |
tgatctgattgtgcagttcgtagcagcatgcagaaagccacctgtttactgtgttatcacagaatatctattagaaggttcatt |
35355277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 428
Target Start/End: Original strand, 35358026 - 35358177
Alignment:
| Q |
269 |
catacttcacatcatgtagagaaatttattattacaaggaaggtgttttatacatgatttctcnnnnnnnnnnnnnnnntgatctgattgtgcagttggt |
368 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |||||||||||||| | |||||||| | ||| ||||| |||||| || |
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| T |
35358026 |
catacttcacatcatgtagggaaatttactattacaaagaaggtgttttataaacgatttctcatacatct--------taatccgattgcgcagtttgt |
35358117 |
T |
|
| Q |
369 |
agcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttc |
428 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
35358118 |
agcagcatgcagaaaagcatatgtttattgtgttatcacagagtatctatcggaaggttc |
35358177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 35355123 - 35355185
Alignment:
| Q |
269 |
catacttcacatcatgtagagaaatttattattacaaggaaggtgttttatacatgatttctc |
331 |
Q |
| |
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|||| |||||||||||| ||||||| || ||| |||||||| || |||||||||| ||||||| |
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| T |
35355123 |
catatttcacatcatgttgagaaatctactataacaaggaatgtattttatacataatttctc |
35355185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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